Mutant Information 

Mutant NameFN-109  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 17

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr123118798T-CHETNON_SYNONYMOUS_CODINGLOC_Os01g40870
SBS  Chr126092251G-AHETINTERGENIC
SBS  Chr140623501A-GHETINTERGENIC
SBS  Chr140623504A-THETINTERGENIC
SBS  Chr140962450G-AHETUTR_3_PRIME
SBS  Chr112760410G-AHOMOINTRON
SBS  Chr112700924A-GHETINTERGENIC
SBS  Chr127648994G-AHETINTERGENIC
SBS  Chr210750654G-AHOMOINTERGENIC
SBS  Chr29457488T-AHETINTERGENIC
SBS  Chr320075873A-GHETINTERGENIC
SBS  Chr420319840C-THOMOSYNONYMOUS_CODING
SBS  Chr49431695C-THETNON_SYNONYMOUS_CODINGLOC_Os04g17190
SBS  Chr511954732G-AHETINTERGENIC
SBS  Chr511954733G-AHETINTERGENIC
SBS  Chr524344810T-GHETINTERGENIC
SBS  Chr613394392T-CHETINTERGENIC

Deletions: 30

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr140549528405495313
Deletion  Chr131184520311845244
Deletion  Chr1326817733268178613
Deletion  Chr111138001128000014200022
Deletion  Chr1117354203173542085
Deletion  Chr1126744648267446513
Deletion  Chr11208818882088189911
Deletion  Chr227049783270497852
Deletion  Chr2597495359749541
Deletion  Chr3163681261636813711
Deletion  Chr315695799156958001
Deletion  Chr41119000111208000180003
Deletion  Chr4809134680913504
Deletion  Chr4144825081448252012
Deletion  Chr418591312185913219
Deletion  Chr4245948224594831
Deletion  Chr516223426162234315
Deletion  Chr522813961228139676
Deletion  Chr623642836236428371LOC_Os06g39790
Deletion  Chr6615600162470009100018
Deletion  Chr6772671377267174
Deletion  Chr74008228400824416
Deletion  Chr8139438821394390119LOC_Os08g23140
Deletion  Chr8117465281174653810
Deletion  Chr8246341524634216
Deletion  Chr8144211051442111510
Deletion  Chr8901097790109792
Deletion  Chr9317640831764091
Deletion  Chr9180856461808566014LOC_Os09g29750
Deletion  Chr9856811085681166

Insertions: 2

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr123912303239123032
Insertion  Chr12949047894904782

Inversions: 5

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr119089921137893LOC_Os11g03160
Inversion  Chr589590589107171
Inversion  Chr589590709107170
Inversion  Chr657051746414766LOC_Os06g10920
Inversion  Chr662474176414835LOC_Os06g11790

Translocations: 6

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr11909000Chr421551884LOC_Os04g35420
Translocation  Chr111273486Chr421551884LOC_Os04g35420
Translocation  Chr65705200Chr22795566LOC_Os06g10920
Translocation  Chr65709290Chr22795578
Translocation  Chr66834288Chr414515518LOC_Os04g25130
Translocation  Chr66843035Chr4145155212