Mutant Information 

Mutant NameFN-16  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 7

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr1221041086T-CHomoINTERGENIC
SBS  Chr319275078T-CHomoINTERGENIC
SBS  Chr425863850A-THomoNON_SYNONYMOUS_CODINGLOC_Os04g43700
SBS  Chr517607842A-THomoUTR_3_PRIME
SBS  Chr63041654T-AHomoINTERGENIC
SBS  Chr66131898C-THomoINTERGENIC
SBS  Chr99743943C-THomoSYNONYMOUS_CODING

Deletions: 29

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr134531871345318809LOC_Os01g59690
Deletion  Chr17602775760278914
Deletion  Chr112323503123235107
Deletion  Chr1021695502216955031
Deletion  Chr11613737261373742
Deletion  Chr11105030510503116
Deletion  Chr12241189624118971
Deletion  Chr122510735251075116
Deletion  Chr214820135148201361
Deletion  Chr225487194254871951
Deletion  Chr2498994449899473LOC_Os02g09720
Deletion  Chr222128504221285084
Deletion  Chr3822302482230251
Deletion  Chr330618814306188162
Deletion  Chr3290044522900446614
Deletion  Chr4728343372834341
Deletion  Chr4104590971045910912LOC_Os04g18810
Deletion  Chr4177260011787400014800022
Deletion  Chr4671131367113207
Deletion  Chr5941368994136956LOC_Os05g16600
Deletion  Chr570818708202
Deletion  Chr51924148192416416LOC_Os05g04220
Deletion  Chr521967339219673401
Deletion  Chr5163890516389127
Deletion  Chr617897158178971657LOC_Os06g30840
Deletion  Chr619402391194023965
Deletion  Chr8274815172748153720
Deletion  Chr8676843867684424
Deletion  Chr8227031352270314611

Insertions: 18

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr1222338022233802
Insertion  Chr1310592431059243
Insertion  Chr118332200183322001
Insertion  Chr111865981865984
Insertion  Chr11354879335487932LOC_Os11g07124
Insertion  Chr1116919102169191022
Insertion  Chr1124937438249374381
Insertion  Chr123658869365886980LOC_Os12g07410
Insertion  Chr219267013192670132
Insertion  Chr219427799194277996
Insertion  Chr3808202980820291
Insertion  Chr316732248167322482
Insertion  Chr411057409110574091
Insertion  Chr711316860113168607
Insertion  Chr726068810260688101
Insertion  Chr810678210106782102
Insertion  Chr814913762149137625LOC_Os08g24680
Insertion  Chr8197444481974444813LOC_Os08g31840

Inversions: 2

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr122084290422614532LOC_Os12g34380
Inversion  Chr122104067222614527