Mutant Information 

Mutant NameFN-162  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 38

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr121986547G-AHETINTERGENIC
SBS  Chr105202116T-AHETINTRON
SBS  Chr1116233686G-AHETNON_SYNONYMOUS_CODINGLOC_Os11g28230
SBS  Chr1116464038T-AHETINTERGENIC
SBS  Chr1116762423A-GHETNON_SYNONYMOUS_CODINGLOC_Os11g28970
SBS  Chr123052894A-CHETINTRON
SBS  Chr127417691G-AHOMOINTERGENIC
SBS  Chr1214691080T-AHOMOINTERGENIC
SBS  Chr1217035098T-AHETINTRON
SBS  Chr1217035099G-THETINTRON
SBS  Chr1217949163G-CHETINTERGENIC
SBS  Chr1219804315G-AHETINTERGENIC
SBS  Chr1221739452A-GHETNON_SYNONYMOUS_CODINGLOC_Os12g35720
SBS  Chr1223898820T-AHETINTERGENIC
SBS  Chr221975764A-CHETINTERGENIC
SBS  Chr324374368C-THOMONON_SYNONYMOUS_CODINGLOC_Os03g43610
SBS  Chr35925808A-GHETINTRON
SBS  Chr36506541G-AHOMOINTERGENIC
SBS  Chr316156054A-THETINTERGENIC
SBS  Chr328122786A-THETINTRON
SBS  Chr428199773A-CHOMONON_SYNONYMOUS_CODINGLOC_Os04g47550
SBS  Chr424653259G-AHETINTERGENIC
SBS  Chr46819455C-GHETINTERGENIC
SBS  Chr434803794G-AHOMOINTERGENIC
SBS  Chr428199774C-AHOMONON_SYNONYMOUS_CODINGLOC_Os04g47550
SBS  Chr515867441G-CHETNON_SYNONYMOUS_CODINGLOC_Os05g27304
SBS  Chr58664270C-THOMOINTERGENIC
SBS  Chr62094578C-THETUTR_5_PRIME
SBS  Chr79945279G-AHETNON_SYNONYMOUS_CODINGLOC_Os07g16910
SBS  Chr712422921C-THETINTERGENIC
SBS  Chr714389256G-CHETINTRON
SBS  Chr716637049C-AHETINTERGENIC
SBS  Chr724982855C-AHOMOINTERGENIC
SBS  Chr723995263T-GHOMOINTERGENIC
SBS  Chr81191630A-GHETINTERGENIC
SBS  Chr9754936C-THETINTERGENIC
SBS  Chr91314546C-GHETINTERGENIC
SBS  Chr915513151T-AHETINTERGENIC

Deletions: 19

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr118616001893000031400049
Deletion  Chr1215188931151889321
Deletion  Chr1210468375104683849LOC_Os12g18150
Deletion  Chr318498853184988552
Deletion  Chr32160001235500019500027
Deletion  Chr427065923270659296
Deletion  Chr413218949132189501
Deletion  Chr43429913429954
Deletion  Chr418043800180438011LOC_Os04g30240
Deletion  Chr512350292123502997
Deletion  Chr5651586765158703
Deletion  Chr5792607379260741
Deletion  Chr5449723144972409
Deletion  Chr7195433171954334326
Deletion  Chr8883229188322932
Deletion  Chr8105611321056114816
Deletion  Chr88831171883118211
Deletion  Chr919581297195813025
Deletion  Chr970781157079070955LOC_Os09g12380

Insertions: 1

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr728173836281738361

Inversions: 3

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr319807392159848LOC_Os03g04620
Inversion  Chr51503269317590343
Inversion  Chr51735719717590339