Mutant Information 

Mutant NameFN-171  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 31

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr17230555G-AHETINTERGENIC
SBS  Chr138985271T-CHETINTERGENIC
SBS  Chr108770644A-GHOMOINTRON
SBS  Chr1011402575C-THOMOINTERGENIC
SBS  Chr1013349067C-THETINTERGENIC
SBS  Chr1119888642G-CHOMOINTERGENIC
SBS  Chr125686199A-GHETINTRON
SBS  Chr129493406C-THETINTERGENIC
SBS  Chr1212417761T-AHETINTRON
SBS  Chr1212601246C-THETINTERGENIC
SBS  Chr1214567988A-GHETNON_SYNONYMOUS_CODINGLOC_Os12g25300
SBS  Chr1217238172C-THETINTERGENIC
SBS  Chr233110797C-GHETINTERGENIC
SBS  Chr23630970T-CHETINTRON
SBS  Chr217994060A-CHETINTERGENIC
SBS  Chr231610069A-GHETSYNONYMOUS_CODING
SBS  Chr327122060T-CHETINTRON
SBS  Chr326404708G-AHETINTRON
SBS  Chr529483414G-THOMOINTRON
SBS  Chr69026370T-CHETINTERGENIC
SBS  Chr619660724A-GHETINTERGENIC
SBS  Chr62982183C-THETNON_SYNONYMOUS_CODINGLOC_Os06g06390
SBS  Chr77602798C-THETINTERGENIC
SBS  Chr718489318G-CHOMOINTERGENIC
SBS  Chr715066633T-GHOMOINTERGENIC
SBS  Chr711598344C-THETINTERGENIC
SBS  Chr78304360C-AHOMOINTRON
SBS  Chr711908520T-CHOMOINTERGENIC
SBS  Chr89643852T-AHOMOINTERGENIC
SBS  Chr8297893A-THOMONON_SYNONYMOUS_CODINGLOC_Os08g01480
SBS  Chr9403565G-THOMONON_SYNONYMOUS_CODINGLOC_Os09g01570

Deletions: 19

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr171980017218000200003
Deletion  Chr1358342893583430819LOC_Os01g61910
Deletion  Chr1125142583251425874
Deletion  Chr218802395188023983
Deletion  Chr2296151822961519210
Deletion  Chr328075422280754231
Deletion  Chr314515035145150372LOC_Os03g25390
Deletion  Chr315764188157641913LOC_Os03g27480
Deletion  Chr419443664194436662
Deletion  Chr5180210881802109810
Deletion  Chr625700336257003371
Deletion  Chr6722761772276181
Deletion  Chr612916406129164071
Deletion  Chr612605847126058514
Deletion  Chr616459203164592074
Deletion  Chr6785145478514639LOC_Os06g14080
Deletion  Chr7116999421169996624
Deletion  Chr91606293816090836278982
Deletion  Chr9969464996946501LOC_Os09g15860

Insertions: 4

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr1434544843454481
Insertion  Chr1013395010133950101
Insertion  Chr314225598142255982
Insertion  Chr826530008265300081

Inversions: 10

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr172183357426315LOC_Os01g13000
Inversion  Chr177427878127122LOC_Os01g14510
Inversion  Chr177427878127122LOC_Os01g13800
Inversion  Chr172351007430634LOC_Os01g13320
Inversion  Chr172350887424398LOC_Os01g13310
Inversion  Chr172183357426315LOC_Os01g13310
Inversion  Chr121114370911378081LOC_Os12g19190
Inversion  Chr121114370911378081LOC_Os12g19549
Inversion  Chr121118516811378088LOC_Os12g19290
Inversion  Chr121118516811378088LOC_Os12g19549

Translocations: 3

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr1211185165Chr211350151LOC_Os12g19290
Translocation  Chr1124226033Chr434875686LOC_Os04g58630
Translocation  Chr1124226046Chr434872917LOC_Os04g58630