Mutant Information 

Mutant NameFN-180  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability No


Variant Information 

Single base substitutions: 25

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr18744288T-GHOMOINTERGENIC
SBS  Chr120883107G-CHOMOINTERGENIC
SBS  Chr134398082A-GHETINTERGENIC
SBS  Chr1015414384T-GHOMOINTRON
SBS  Chr1110082376C-GHETINTRON
SBS  Chr118928074T-GHETSYNONYMOUS_CODING
SBS  Chr1125130806G-AHETINTERGENIC
SBS  Chr219996147T-CHETINTERGENIC
SBS  Chr220537786G-AHETINTRON
SBS  Chr220895932T-CHETINTERGENIC
SBS  Chr316844022G-AHETINTERGENIC
SBS  Chr411821108G-AHETINTERGENIC
SBS  Chr435398497G-AHETINTERGENIC
SBS  Chr55282875C-GHETINTERGENIC
SBS  Chr55282877T-CHETINTERGENIC
SBS  Chr59828863G-AHETINTERGENIC
SBS  Chr77340213C-THETINTERGENIC
SBS  Chr726525904C-AHETINTRON
SBS  Chr723270091C-THETINTERGENIC
SBS  Chr711594291T-CHOMOINTRON
SBS  Chr820499483G-AHETINTERGENIC
SBS  Chr816005965G-AHETINTERGENIC
SBS  Chr95705343G-AHETINTERGENIC
SBS  Chr912090773A-CHETNON_SYNONYMOUS_CODINGLOC_Os09g20180
SBS  Chr918925308A-GHOMOINTERGENIC

Deletions: 7

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr10215769772157698710LOC_Os10g40260
Deletion  Chr1019610876196108826LOC_Os10g36650
Deletion  Chr10117030011206400036100054
Deletion  Chr10171171691711717910
Deletion  Chr628199372281993731
Deletion  Chr914063135140631405
Deletion  Chr91414000114155000150003

Insertions: 2

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr1223591693235916931
Insertion  Chr915020241150202412

Inversions: 9

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr122748133227508540LOC_Os12g44330
Inversion  Chr122748133227508540LOC_Os12g44360
Inversion  Chr122749779827508529LOC_Os12g44360
Inversion  Chr122749779827508529LOC_Os12g44360
Inversion  Chr41781684718047410LOC_Os04g29880
Inversion  Chr41781684718047410LOC_Os04g30240
Inversion  Chr41803931818047399LOC_Os04g30230
Inversion  Chr41803931818047399LOC_Os04g30240
Inversion  Chr5823757840903LOC_Os05g02435

Translocations: 2

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr123421175Chr98100460
Translocation  Chr123421543Chr98100363