Mutant Information 

Mutant NameFN-233  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 26

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr122499516C-THETNON_SYNONYMOUS_CODINGLOC_Os01g39890
SBS  Chr125479488C-AHOMONON_SYNONYMOUS_CODINGLOC_Os01g44430
SBS  Chr1021186833T-GHETINTERGENIC
SBS  Chr1110912485C-THETINTRON
SBS  Chr1113323425G-CHOMOINTERGENIC
SBS  Chr1116018000T-GHETINTERGENIC
SBS  Chr1210968642A-THETINTRON
SBS  Chr1212396980G-AHETINTERGENIC
SBS  Chr1220037888A-GHETINTERGENIC
SBS  Chr1222141428G-AHETINTERGENIC
SBS  Chr1225331134C-AHETINTRON
SBS  Chr211326622G-AHOMOINTERGENIC
SBS  Chr226963475A-GHOMOINTRON
SBS  Chr233171085C-THOMOINTRON
SBS  Chr35233356C-THOMONON_SYNONYMOUS_CODINGLOC_Os03g10270
SBS  Chr332973945C-THOMOINTERGENIC
SBS  Chr426353955T-CHOMOINTERGENIC
SBS  Chr433542829C-AHETSYNONYMOUS_CODING
SBS  Chr433207888G-AHETINTERGENIC
SBS  Chr417688251C-THETNON_SYNONYMOUS_CODINGLOC_Os04g29700
SBS  Chr63475228A-THETINTRON
SBS  Chr622871045G-THETNON_SYNONYMOUS_CODINGLOC_Os06g38600
SBS  Chr727704388G-AHETINTRON
SBS  Chr75063267C-GHETINTERGENIC
SBS  Chr821178789C-THETINTRON
SBS  Chr818791528T-CHETINTERGENIC

Deletions: 26

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr199911999154
Deletion  Chr15605617560563821
Deletion  Chr117178511171785154
Deletion  Chr1019977467199774681
Deletion  Chr10250808425080862LOC_Os10g05130
Deletion  Chr1214898435148984405
Deletion  Chr1222517400225174011
Deletion  Chr1227133543271335463
Deletion  Chr2203474462034745711
Deletion  Chr217760970177609711
Deletion  Chr310737671107376721
Deletion  Chr429513276295132782
Deletion  Chr424218852242188531
Deletion  Chr420084839200848445LOC_Os04g33200
Deletion  Chr4145998281522192662209881
Deletion  Chr517304217173042181
Deletion  Chr624615709246157134
Deletion  Chr71323800113282000440006
Deletion  Chr724679630246796355
Deletion  Chr73761367376139427LOC_Os07g07540
Deletion  Chr712371335123713361
Deletion  Chr79175667917568215LOC_Os07g15800
Deletion  Chr719247912192479131
Deletion  Chr8134162131341623623
Deletion  Chr950918385092199361
Deletion  Chr9804024980402534

Insertions: 31

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr111052183110521832
Insertion  Chr111598414115984149
Insertion  Chr123798371237983712
Insertion  Chr1276336532763365314
Insertion  Chr138264827382648271
Insertion  Chr10218921621892162
Insertion  Chr102738516273851616
Insertion  Chr1022061707220617072
Insertion  Chr11162314516231452
Insertion  Chr1210974998109749986
Insertion  Chr1225463863254638634
Insertion  Chr221772174217721742
Insertion  Chr322634780226347802
Insertion  Chr43129933129932
Insertion  Chr416632299166322994
Insertion  Chr421130579211305792
Insertion  Chr429504626295046261
Insertion  Chr5504707150470713
Insertion  Chr5736532273653222
Insertion  Chr5143868701438687012
Insertion  Chr521765747217657474
Insertion  Chr62942475294247510
Insertion  Chr623632293236322934
Insertion  Chr71568078156807829
Insertion  Chr718932575189325751
Insertion  Chr727782212277822122
Insertion  Chr8420314642031461
Insertion  Chr810101762101017622
Insertion  Chr810173562101735622
Insertion  Chr811623803116238034
Insertion  Chr934207434207431

Inversions: 1

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr657405935750427