Mutant Information 

Mutant NameFN-237  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability No


Variant Information 

Single base substitutions: 24

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr114080406G-AHETUTR_3_PRIME
SBS  Chr1019285214T-GHETINTERGENIC
SBS  Chr1020303969G-AHETINTERGENIC
SBS  Chr1020637627C-THETINTERGENIC
SBS  Chr1120875595G-THETINTERGENIC
SBS  Chr1123859302T-AHETUTR_3_PRIME
SBS  Chr1128737942T-CHETINTERGENIC
SBS  Chr1212724846G-CHETINTERGENIC
SBS  Chr1215276846G-AHETINTRON
SBS  Chr1216435300A-GHETINTERGENIC
SBS  Chr1217680067A-GHETINTERGENIC
SBS  Chr217610446C-THETINTRON
SBS  Chr235881604T-AHOMOINTRON
SBS  Chr210454053G-AHETINTERGENIC
SBS  Chr215117924G-AHETNON_SYNONYMOUS_CODINGLOC_Os02g25800
SBS  Chr324125902G-AHOMOSYNONYMOUS_CODING
SBS  Chr414547660G-AHOMOINTERGENIC
SBS  Chr617659908C-GHETNON_SYNONYMOUS_CODINGLOC_Os06g30520
SBS  Chr615511240C-THOMOINTERGENIC
SBS  Chr85770850A-CHETINTERGENIC
SBS  Chr824992899A-CHETINTERGENIC
SBS  Chr96321943G-AHOMOINTERGENIC
SBS  Chr920759320T-AHETINTERGENIC
SBS  Chr99358395G-AHOMOINTRON

Deletions: 14

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr121202534212025351
Deletion  Chr121978346219783482
Deletion  Chr1225412373254136781305
Deletion  Chr12159666021596661614LOC_Os12g27210
Deletion  Chr235807503358075041LOC_Os02g58580
Deletion  Chr21512400115137000130003
Deletion  Chr316650974166509773
Deletion  Chr31587200115893000210005
Deletion  Chr429210431292104321
Deletion  Chr4146750441467505713
Deletion  Chr6927323492732406
Deletion  Chr6287429612874297110LOC_Os06g47460
Deletion  Chr911902200119022011
Deletion  Chr915509436155094459

Insertions: 4

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr11957807895780781
Insertion  Chr7413874241387421
Insertion  Chr726687478266874781
Insertion  Chr8279280327928034

Inversions: 9

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr102273291823036132LOC_Os10g42210
Inversion  Chr102273291823036132LOC_Os10g42710
Inversion  Chr102303614823117016LOC_Os10g42710
Inversion  Chr102303614823117016LOC_Os10g42870
Inversion  Chr21511814517762118LOC_Os02g25800
Inversion  Chr21511814517762118LOC_Os02g29870
Inversion  Chr21511816515137299LOC_Os02g25800
Inversion  Chr625838925515119LOC_Os06g05720
Inversion  Chr625850875515120LOC_Os06g05720

Translocations: 5

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr84449112Chr215117259LOC_Os02g25800
Translocation  Chr84449116Chr217761611LOC_Os02g29870
Translocation  Chr715457939Chr62583899LOC_Os06g05720
Translocation  Chr1225412400Chr1023116992LOC_Os10g42870
Translocation  Chr1225413676Chr1022732928LOC_Os10g42210