Mutant Information 

Mutant NameFN-246  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 40

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr11604415A-THOMOUTR_3_PRIME
SBS  Chr143024685A-THETINTERGENIC
SBS  Chr141788282C-THETINTRON
SBS  Chr134311638G-AHETINTRON
SBS  Chr134311629A-GHETINTRON
SBS  Chr133463059T-CHETNON_SYNONYMOUS_CODINGLOC_Os01g57870
SBS  Chr132743063C-THETINTERGENIC
SBS  Chr131709282C-THETINTERGENIC
SBS  Chr131337584T-AHETINTERGENIC
SBS  Chr131337583G-AHETINTERGENIC
SBS  Chr1016407846C-THETSYNONYMOUS_CODING
SBS  Chr1020788262G-AHOMOINTERGENIC
SBS  Chr1122034211C-THOMOINTERGENIC
SBS  Chr1125632500A-GHETINTERGENIC
SBS  Chr128985179C-THETINTERGENIC
SBS  Chr1219963046G-THETINTERGENIC
SBS  Chr210441273T-AHETINTERGENIC
SBS  Chr227042432A-THOMOINTERGENIC
SBS  Chr23707259T-AHETINTRON
SBS  Chr220748897T-GHETINTRON
SBS  Chr34467224C-THETINTERGENIC
SBS  Chr324688379G-CHETINTERGENIC
SBS  Chr35465129C-THETINTERGENIC
SBS  Chr327887062T-AHOMOINTERGENIC
SBS  Chr326326096G-AHETSYNONYMOUS_CODING
SBS  Chr525552838C-THETINTERGENIC
SBS  Chr510981049C-THETINTRON
SBS  Chr525552846A-THETINTERGENIC
SBS  Chr526248921A-THETINTERGENIC
SBS  Chr526376512G-AHETINTERGENIC
SBS  Chr722089512C-THOMOINTRON
SBS  Chr716536956A-THOMOINTERGENIC
SBS  Chr86711300G-AHETINTERGENIC
SBS  Chr815318632C-THETINTRON
SBS  Chr822935189A-GHETINTERGENIC
SBS  Chr811885003A-THOMOINTERGENIC
SBS  Chr913937965A-GHETINTERGENIC
SBS  Chr96759114G-CHETINTERGENIC
SBS  Chr9764939C-THETNON_SYNONYMOUS_CODINGLOC_Os09g02080
SBS  Chr919029062G-AHETINTRON

Deletions: 19

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr119990079199900801
Deletion  Chr134225520342255211
Deletion  Chr136005981360059832
Deletion  Chr111936796119368026LOC_Os01g21360
Deletion  Chr1300567213005673514LOC_Os01g52280
Deletion  Chr135238563352402981735LOC_Os01g60920
Deletion  Chr11162233316223429
Deletion  Chr11243239124323998
Deletion  Chr11408205440820551LOC_Os11g07910
Deletion  Chr12131550011357400041900055
Deletion  Chr12261583622615837210
Deletion  Chr2811881681188226
Deletion  Chr2187317471873176619
Deletion  Chr333844421338444265
Deletion  Chr412289468122894691
Deletion  Chr4312998313129987645LOC_Os04g52614
Deletion  Chr511643581116435854
Deletion  Chr8268626762686269519LOC_Os08g42490
Deletion  Chr91782762178278018

Insertions: 3

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr1020317590203175901
Insertion  Chr1021857128218571284
Insertion  Chr1113209863132098631

Inversions: 5

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr176971112658774
Inversion  Chr177024012658769
Inversion  Chr121395637114071097
Inversion  Chr31128918712171910
Inversion  Chr31129151512171919

Translocations: 9

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr1110368080Chr311289216LOC_Os11g18366
Translocation  Chr1110368104Chr311291416LOC_Os11g18366
Translocation  Chr917192153Chr66805724LOC_Os09g28310
Translocation  Chr917192159Chr66808456LOC_Os09g28310
Translocation  Chr917209655Chr65778580
Translocation  Chr917209670Chr327808037
Translocation  Chr917210656Chr327808026
Translocation  Chr917963356Chr520175405
Translocation  Chr917992550Chr520175507LOC_Os09g29584