Mutant Information 

Mutant NameFN-249  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 28

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr1020539393C-AHOMONON_SYNONYMOUS_CODINGLOC_Os10g38450
SBS  Chr1020539392G-AHOMONON_SYNONYMOUS_CODINGLOC_Os10g38450
SBS  Chr102032071G-AHOMONON_SYNONYMOUS_CODINGLOC_Os10g04290
SBS  Chr22111402A-THETINTRON
SBS  Chr235320871C-AHETUTR_3_PRIME
SBS  Chr235320870C-AHETUTR_3_PRIME
SBS  Chr229384984C-THETNON_SYNONYMOUS_CODINGLOC_Os02g48010
SBS  Chr228265973T-GHETINTERGENIC
SBS  Chr228265966C-GHETINTERGENIC
SBS  Chr228131721A-THETINTERGENIC
SBS  Chr225493739G-AHETINTRON
SBS  Chr224696815C-THETINTERGENIC
SBS  Chr220621142G-AHETINTERGENIC
SBS  Chr224696816A-THETINTERGENIC
SBS  Chr331421523C-AHETINTERGENIC
SBS  Chr324130349T-CHOMOINTRON
SBS  Chr317284824C-AHOMOINTERGENIC
SBS  Chr416917956T-CHOMOINTERGENIC
SBS  Chr411979210G-AHETINTERGENIC
SBS  Chr411786631G-THOMOINTRON
SBS  Chr411897427C-THOMOINTRON
SBS  Chr48790574C-AHETSYNONYMOUS_CODING
SBS  Chr63670457G-CHOMOINTERGENIC
SBS  Chr719537966G-AHETINTERGENIC
SBS  Chr712649102G-THETINTERGENIC
SBS  Chr8430654T-CHETINTERGENIC
SBS  Chr812695180C-THOMOINTERGENIC
SBS  Chr95624693C-AHETINTERGENIC

Deletions: 16

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr113611652136116597
Deletion  Chr122728310227283122LOC_Os01g40250
Deletion  Chr12968600130414000728000120
Deletion  Chr115515865155158694
Deletion  Chr10517045151704521
Deletion  Chr1121634693216346974LOC_Os11g36660
Deletion  Chr12130132571301327417
Deletion  Chr229790112297901131
Deletion  Chr310407047104070481
Deletion  Chr326742332267423331
Deletion  Chr592370019247000100002
Deletion  Chr592590019316000570008
Deletion  Chr72769450927694655146LOC_Os07g46410
Deletion  Chr712738840127388433
Deletion  Chr8227015382270157133
Deletion  Chr93124451312446312LOC_Os09g06560

Insertions: 1

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr729563869295638694

Inversions: 1

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr52424914924490250