Mutant Information 

Mutant NameFN-252  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 29

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr11689761G-THETINTERGENIC
SBS  Chr13676987A-GHETINTRON
SBS  Chr13676988G-AHETINTRON
SBS  Chr115365538C-AHETINTERGENIC
SBS  Chr126635633A-THETINTRON
SBS  Chr140996561T-CHOMOINTRON
SBS  Chr109781919C-THETINTERGENIC
SBS  Chr1115096452C-THETINTERGENIC
SBS  Chr1118482803G-AHETINTERGENIC
SBS  Chr123704140A-GHETINTERGENIC
SBS  Chr127263028A-CHETINTERGENIC
SBS  Chr1213078553C-THETINTERGENIC
SBS  Chr319025277G-AHETINTERGENIC
SBS  Chr323673410T-AHETNON_SYNONYMOUS_CODINGLOC_Os03g42540
SBS  Chr328187453C-AHETINTRON
SBS  Chr335625054C-GHOMOINTERGENIC
SBS  Chr630212479A-THETINTERGENIC
SBS  Chr630212481T-CHETINTERGENIC
SBS  Chr625792907C-THOMONON_SYNONYMOUS_CODINGLOC_Os06g42920
SBS  Chr65056263A-THOMOINTRON
SBS  Chr72586170C-THETINTRON
SBS  Chr713555668T-CHETINTERGENIC
SBS  Chr711591106A-GHETINTERGENIC
SBS  Chr74589330G-AHETSYNONYMOUS_CODING
SBS  Chr814670926C-GHOMOINTERGENIC
SBS  Chr915335012A-GHETINTRON
SBS  Chr921751422A-GHETINTERGENIC
SBS  Chr91646558T-GHETINTERGENIC
SBS  Chr911942864C-GHETINTERGENIC

Deletions: 13

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr125390654253906617
Deletion  Chr1237672652376727813
Deletion  Chr140616075406160761LOC_Os01g70180
Deletion  Chr1017731741177317421
Deletion  Chr122435100124369000180004
Deletion  Chr1212194088121940891
Deletion  Chr3285223492852237324
Deletion  Chr3342038234203875
Deletion  Chr6157304451573048439
Deletion  Chr8358763735876447
Deletion  Chr820704436207044437
Deletion  Chr813867289138672923
Deletion  Chr91653475165349217

Insertions: 1

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr43132288313228817

Inversions: 5

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr32959359229866049LOC_Os03g51680
Inversion  Chr32959361929866075LOC_Os03g51680
Inversion  Chr42705682427236544LOC_Os04g45970
Inversion  Chr42705947927237102LOC_Os04g45730
Inversion  Chr42705947927237102LOC_Os04g45970

Translocations: 5

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr1017572680Chr712494498LOC_Os10g33390
Translocation  Chr1017572708Chr712494720LOC_Os10g33390
Translocation  Chr920151313Chr431373388LOC_Os09g34130
Translocation  Chr427056834Chr235057394LOC_Os02g57220
Translocation  Chr427059477Chr2350574072