Mutant Information 

Mutant NameFN-344  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 41

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr19775143T-CHOMOINTERGENIC
SBS  Chr134231096A-GHOMOINTERGENIC
SBS  Chr1010006385G-AHOMONON_SYNONYMOUS_CODINGLOC_Os10g19950
SBS  Chr1013083659C-THETINTRON
SBS  Chr11931482G-AHETNON_SYNONYMOUS_CODINGLOC_Os11g02800
SBS  Chr1128674252G-AHETNON_SYNONYMOUS_CODINGLOC_Os11g47452
SBS  Chr113473205T-CHETINTRON
SBS  Chr115193634C-GHETINTERGENIC
SBS  Chr123858893A-THETINTRON
SBS  Chr128233157C-AHOMOINTERGENIC
SBS  Chr1210209312G-THETINTRON
SBS  Chr1211362361C-THETINTERGENIC
SBS  Chr1226789902G-THETINTERGENIC
SBS  Chr230277452G-THETINTRON
SBS  Chr229012840C-THETINTRON
SBS  Chr211259620T-AHETINTERGENIC
SBS  Chr332377468A-CHETNON_SYNONYMOUS_CODINGLOC_Os03g56820
SBS  Chr335791825T-CHETINTRON
SBS  Chr336397051A-CHETINTRON
SBS  Chr46849419A-THETINTERGENIC
SBS  Chr435063790A-THOMOINTERGENIC
SBS  Chr435299210C-AHETINTRON
SBS  Chr54959302A-THETINTRON
SBS  Chr613494857C-THOMOINTERGENIC
SBS  Chr617728879C-THOMOINTERGENIC
SBS  Chr617728891A-THOMOINTERGENIC
SBS  Chr76894587C-THOMOINTERGENIC
SBS  Chr713903842T-CHOMOINTERGENIC
SBS  Chr715614080T-CHOMOINTERGENIC
SBS  Chr77834990T-GHETINTERGENIC
SBS  Chr821997279G-AHETINTERGENIC
SBS  Chr83681494G-AHETINTRON
SBS  Chr827342496A-GHETINTERGENIC
SBS  Chr826300723C-AHETINTERGENIC
SBS  Chr823203311T-GHOMOINTERGENIC
SBS  Chr815190039A-GHETINTRON
SBS  Chr819276580C-THETINTERGENIC
SBS  Chr917606675A-THETINTRON
SBS  Chr911872926A-GHETINTRON
SBS  Chr912671540C-GHETINTERGENIC
SBS  Chr918575906C-THETINTERGENIC

Deletions: 32

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr126756644267566539
Deletion  Chr115098184150981862
Deletion  Chr109313229313286
Deletion  Chr101363960136397313
Deletion  Chr10321782632178282
Deletion  Chr1018485554184855551
Deletion  Chr1126544613265446229
Deletion  Chr1210874444108744462LOC_Os12g18780
Deletion  Chr12334571933457201
Deletion  Chr217707917177079203LOC_Os02g29760
Deletion  Chr233516697335166992
Deletion  Chr25445624544563410LOC_Os02g10350
Deletion  Chr235039957350399581LOC_Os02g57190
Deletion  Chr3346648434664862
Deletion  Chr3252001592520017718
Deletion  Chr310273043102730463
Deletion  Chr328480086284800893
Deletion  Chr3114202001142021414LOC_Os03g20200
Deletion  Chr3725564172556421
Deletion  Chr42717400127226000520007
Deletion  Chr423183628231836346
Deletion  Chr4133908231339088966
Deletion  Chr5478354347835441
Deletion  Chr526651546266515526LOC_Os05g45980
Deletion  Chr58142309814231910
Deletion  Chr622221355222213594
Deletion  Chr6163983611639837514LOC_Os06g28800
Deletion  Chr622968375229683761LOC_Os06g38680
Deletion  Chr813654261136542621
Deletion  Chr8180157171801573821
Deletion  Chr911796182117961908
Deletion  Chr9139186001391865757

Insertions: 34

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr1258094125809414
Insertion  Chr1325440732544072
Insertion  Chr1337604833760482
Insertion  Chr1462012646201262
Insertion  Chr123079848230798482
Insertion  Chr135770112357701122
Insertion  Chr140542753405427534
Insertion  Chr1017838567178385674
Insertion  Chr11488997548899752
Insertion  Chr11520290552029052
Insertion  Chr1116764607167646072
Insertion  Chr1117692659176926599
Insertion  Chr1123208034232080343
Insertion  Chr1126129615261296152
Insertion  Chr12949047894904782
Insertion  Chr1213438403134384032
Insertion  Chr1223521192235211924LOC_Os12g38320
Insertion  Chr216468454164684544LOC_Os02g27810
Insertion  Chr216513963165139632
Insertion  Chr216777344167773442
Insertion  Chr2189101581891015818
Insertion  Chr230290909302909093LOC_Os02g49555
Insertion  Chr3693464269346428
Insertion  Chr325256470252564702
Insertion  Chr325745703257457033
Insertion  Chr55261895261892
Insertion  Chr6841869784186972
Insertion  Chr623437640234376402
Insertion  Chr713284764132847643LOC_Os07g23510
Insertion  Chr8363836236383622
Insertion  Chr819334895193348952
Insertion  Chr823883164238831645
Insertion  Chr910760409107604096
Insertion  Chr9120640081206400812

Inversions: 3

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr1237711974125337
Inversion  Chr419990934355826
Inversion  Chr42717389827181740

Translocations: 7

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr121135525Chr427225816LOC_Os04g45960
Translocation  Chr123768771Chr624624743
Translocation  Chr123768791Chr73382563LOC_Os07g06920
Translocation  Chr123771190Chr73382557LOC_Os07g06920
Translocation  Chr624622164Chr55476644
Translocation  Chr624624735Chr55476629
Translocation  Chr624625513Chr427181736