Mutant Information 

Mutant NameFN-390  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 28

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr1528629C-THETINTERGENIC
SBS  Chr115883054G-CHETINTRON
SBS  Chr116278236C-GHETINTERGENIC
SBS  Chr133779982G-THOMOINTERGENIC
SBS  Chr104317827C-THETSYNONYMOUS_CODING
SBS  Chr1012427593A-GHOMOINTERGENIC
SBS  Chr1013769229C-THETINTERGENIC
SBS  Chr1013784008G-AHETINTRON
SBS  Chr1019010219G-CHETINTRON
SBS  Chr1020093212A-CHETINTRON
SBS  Chr111342621G-THOMOINTRON
SBS  Chr113933849G-THOMOINTERGENIC
SBS  Chr1224266954C-THETINTRON
SBS  Chr27688418A-THOMOINTERGENIC
SBS  Chr211590604G-AHOMOINTERGENIC
SBS  Chr227088884G-AHOMOINTERGENIC
SBS  Chr229543925C-THOMONON_SYNONYMOUS_CODINGLOC_Os02g48260
SBS  Chr31548138C-THETINTERGENIC
SBS  Chr429727263A-GHETINTRON
SBS  Chr43957000G-AHETNON_SYNONYMOUS_CODINGLOC_Os04g07450
SBS  Chr517543235G-THETINTRON
SBS  Chr57003202A-GHOMOINTERGENIC
SBS  Chr517543233C-GHETINTRON
SBS  Chr630786588A-CHOMOINTERGENIC
SBS  Chr612315635A-GHOMOINTERGENIC
SBS  Chr63506415A-THETINTRON
SBS  Chr77853027G-AHOMONON_SYNONYMOUS_CODINGLOC_Os07g13680
SBS  Chr99422503C-AHETUTR_3_PRIME

Deletions: 22

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr1129161312916218
Deletion  Chr1427380064273802014
Deletion  Chr1019240588192405891LOC_Os10g35990
Deletion  Chr11325989132598987LOC_Os11g06690
Deletion  Chr112893900128965000260007
Deletion  Chr41746001746022
Deletion  Chr4202345932023460714LOC_Os04g33410
Deletion  Chr44540224454023612
Deletion  Chr4435847743584869
Deletion  Chr517433059174330612
Deletion  Chr5297672722976729018
Deletion  Chr58426192842621220
Deletion  Chr626550896265508982
Deletion  Chr625544817255448203LOC_Os06g42490
Deletion  Chr611385602113856086LOC_Os06g19900
Deletion  Chr716705030167050388
Deletion  Chr8147479114747976
Deletion  Chr8323906132390621
Deletion  Chr9607224260722486
Deletion  Chr96705241670525211
Deletion  Chr9112628211126283413
Deletion  Chr9569711556971172LOC_Os09g10420

Insertions: 9

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr112095083120950831
Insertion  Chr11151214315121431LOC_Os11g03820
Insertion  Chr2449266244926621
Insertion  Chr219730252197302522
Insertion  Chr5860963886096382LOC_Os05g15160
Insertion  Chr527863457278634574
Insertion  Chr529614468296144684
Insertion  Chr724313236243132362
Insertion  Chr921893216218932169LOC_Os09g37967

Inversions: 1

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr12803223328190550LOC_Os01g49060

Translocations: 4

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr1219693426Chr320566849LOC_Os03g37110
Translocation  Chr1022581492Chr143153364LOC_Os10g41999
Translocation  Chr1022581516Chr143153329LOC_Os10g41999
Translocation  Chr1227344054Chr11289393032