Mutant Information 

Mutant NameFN-41  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 11

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr1606410T-AHomoINTERGENIC
SBS  Chr1606411T-AHomoINTERGENIC
SBS  Chr1022540434G-AHomoINTERGENIC
SBS  Chr1021561865A-CHomoNON_SYNONYMOUS_CODINGLOC_Os10g40250
SBS  Chr1021561864A-THomoNON_SYNONYMOUS_CODINGLOC_Os10g40250
SBS  Chr1021476270A-THomoSYNONYMOUS_CODING
SBS  Chr1216577148T-CHomoINTRON
SBS  Chr43116779C-THomoSTOP_GAINEDLOC_Os04g06010
SBS  Chr528009513G-THomoUTR_3_PRIME
SBS  Chr717438543A-THomoINTERGENIC
SBS  Chr85659275T-CHomoSYNONYMOUS_CODING

Deletions: 19

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr1159858761598589014LOC_Os01g28550
Deletion  Chr10199398281993984921
Deletion  Chr1021491890214984286538LOC_Os10g40150
Deletion  Chr121187911411908875297616
Deletion  Chr231486549314865578
Deletion  Chr2177290271772903710
Deletion  Chr2213017842130179814
Deletion  Chr2344358283443584315
Deletion  Chr2818367181836721LOC_Os02g14770
Deletion  Chr2247845502478457727
Deletion  Chr25259932525998755LOC_Os02g10100
Deletion  Chr321625620216256266
Deletion  Chr322271258222712646
Deletion  Chr467790017480000701000103
Deletion  Chr576571687657611443
Deletion  Chr716913024169130273
Deletion  Chr816942061169420621
Deletion  Chr8278832922788332836
Deletion  Chr9109587910958801

Insertions: 4

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr327783107277831071
Insertion  Chr617168192171681921
Insertion  Chr83259133259134
Insertion  Chr814740268147402686

Inversions: 4

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr112003985920175364LOC_Os11g34440
Inversion  Chr328304983114970LOC_Os03g06210
Inversion  Chr568469667515281LOC_Os05g11980
Inversion  Chr568671127510322

Translocations: 3

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr67457300Chr115348113
Translocation  Chr418702339Chr115347442LOC_Os01g27490
Translocation  Chr418702340Chr113635566LOC_Os01g24200