Mutant Information 

Mutant NameFN-53  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 25

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr114807490A-THOMOINTERGENIC
SBS  Chr120256583A-GHETINTRON
SBS  Chr1015401101A-THETINTERGENIC
SBS  Chr1111791891G-THETINTRON
SBS  Chr117747765A-GHOMOINTERGENIC
SBS  Chr121076537A-GHETINTERGENIC
SBS  Chr229967274C-THETINTERGENIC
SBS  Chr230277452G-THETINTRON
SBS  Chr232052559C-THETINTERGENIC
SBS  Chr329989262T-AHETINTERGENIC
SBS  Chr318213558T-CHETINTRON
SBS  Chr42981012C-AHOMONON_SYNONYMOUS_CODINGLOC_Os04g05800
SBS  Chr47161159T-CHOMOINTERGENIC
SBS  Chr435299971G-AHETNON_SYNONYMOUS_CODINGLOC_Os04g59380
SBS  Chr511878608C-THETINTERGENIC
SBS  Chr54560781T-CHETINTRON
SBS  Chr511164322A-GHOMONON_SYNONYMOUS_CODINGLOC_Os05g19220
SBS  Chr522234298C-THOMOINTERGENIC
SBS  Chr66478931T-CHOMONON_SYNONYMOUS_CODINGLOC_Os06g12090
SBS  Chr613181040C-GHETINTRON
SBS  Chr619949404G-AHOMOINTRON
SBS  Chr717219101A-CHETINTERGENIC
SBS  Chr710682045A-THETINTRON
SBS  Chr76894587C-THETINTERGENIC
SBS  Chr813697729C-GHETINTERGENIC

Deletions: 19

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr119855264198552695
Deletion  Chr101174935117500570
Deletion  Chr1123539679235396812
Deletion  Chr1117558478175584846
Deletion  Chr12346456234645708
Deletion  Chr124106918410693921
Deletion  Chr217579256175792648LOC_Os02g29550
Deletion  Chr2289832322898325018
Deletion  Chr334642948346429491
Deletion  Chr328921589289215956
Deletion  Chr33566343356635714
Deletion  Chr415421866154218671
Deletion  Chr523668908236689124
Deletion  Chr512885657128856603
Deletion  Chr519379420193794222
Deletion  Chr516558928165589368
Deletion  Chr6203792262037923610
Deletion  Chr7154727211547273211LOC_Os07g26780
Deletion  Chr811031626110316282

Insertions: 1

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr3940898794089871

Inversions: 8

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr101778148318148550LOC_Os10g33710
Inversion  Chr101778148318148550LOC_Os10g34020
Inversion  Chr101778150418148588LOC_Os10g33710
Inversion  Chr101778150418148588LOC_Os10g34020
Inversion  Chr31682641616866786LOC_Os03g29520
Inversion  Chr31682641616866786LOC_Os03g29584
Inversion  Chr31682694516866926LOC_Os03g29520
Inversion  Chr31682694516866926LOC_Os03g29584

Translocations: 1

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr724092451Chr36551739