Mutant Information 

Mutant NameFN-79  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 21

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr139691931G-THOMONON_SYNONYMOUS_CODINGLOC_Os01g68320
SBS  Chr1112645753G-AHETNON_SYNONYMOUS_CODINGLOC_Os11g22000
SBS  Chr1110541977T-CHETINTERGENIC
SBS  Chr1116922525C-THETINTERGENIC
SBS  Chr211857669A-CHETINTERGENIC
SBS  Chr215749306T-GHETINTERGENIC
SBS  Chr228942565T-AHETNON_SYNONYMOUS_CODINGLOC_Os02g47410
SBS  Chr315120390T-CHETNON_SYNONYMOUS_CODINGLOC_Os03g26460
SBS  Chr320276847G-AHETINTRON
SBS  Chr324374368C-THOMONON_SYNONYMOUS_CODINGLOC_Os03g43610
SBS  Chr327481755G-AHOMOINTERGENIC
SBS  Chr428819602G-AHOMOINTERGENIC
SBS  Chr428819603T-AHOMOINTERGENIC
SBS  Chr428670715T-CHOMOINTERGENIC
SBS  Chr47025607C-THOMOINTRON
SBS  Chr5437010G-CHOMOUTR_5_PRIME
SBS  Chr628822643T-GHETINTERGENIC
SBS  Chr72285666C-THETINTERGENIC
SBS  Chr723382455T-GHETINTERGENIC
SBS  Chr812651862T-AHETINTERGENIC
SBS  Chr816903387C-GHETINTERGENIC

Deletions: 16

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr1265252712652532352LOC_Os01g46590
Deletion  Chr15238635238641
Deletion  Chr1012811423128114241
Deletion  Chr10180156061802824112635LOC_Os10g33920
Deletion  Chr12573620057362011
Deletion  Chr1292563439256796453
Deletion  Chr127812907812922
Deletion  Chr219302044193020451
Deletion  Chr3290833472908336215
Deletion  Chr3311522183115223315
Deletion  Chr424737521247375221
Deletion  Chr4281230012840000027700046
Deletion  Chr6697163069716355
Deletion  Chr7984803498480406
Deletion  Chr825310001253950008500018
Deletion  Chr918768863187688663

Insertions: 4

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr334789048347890481
Insertion  Chr629052637290526372
Insertion  Chr728173836281738361
Insertion  Chr826442291264422912

Translocations: 4

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr129256377Chr424005233LOC_Os04g40380
Translocation  Chr129256731Chr1120142714LOC_Os11g34364
Translocation  Chr1120142713Chr1017470345LOC_Os11g34364
Translocation  Chr1120256927Chr10174732192