Mutant Information 

Mutant NameFN239-S  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 29

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr19055591C-THOMOINTERGENIC
SBS  Chr110947051T-CHETINTERGENIC
SBS  Chr119599476T-CHETINTERGENIC
SBS  Chr125447262A-THETINTERGENIC
SBS  Chr118087822G-AHOMOINTERGENIC
SBS  Chr119586381A-GHETINTERGENIC
SBS  Chr1123129221C-GHETNON_SYNONYMOUS_CODINGLOC_Os11g38860
SBS  Chr123167435T-CHOMOINTERGENIC
SBS  Chr1211796995G-THETSYNONYMOUS_CODING
SBS  Chr1225342565G-AHETINTERGENIC
SBS  Chr1226184816A-THETUTR_3_PRIME
SBS  Chr1227144775A-CHETINTERGENIC
SBS  Chr2187907A-GHETINTRON
SBS  Chr310272016A-CHOMOINTERGENIC
SBS  Chr316817056T-AHETINTRON
SBS  Chr318778335C-GHOMOINTERGENIC
SBS  Chr320903739A-CHOMOINTERGENIC
SBS  Chr321135640A-THOMOINTERGENIC
SBS  Chr324637859A-THOMOINTERGENIC
SBS  Chr44426336C-THOMOUTR_3_PRIME
SBS  Chr430851457G-AHOMOINTERGENIC
SBS  Chr42039521G-AHETINTERGENIC
SBS  Chr427430028T-AHOMOINTERGENIC
SBS  Chr512498179T-AHETINTERGENIC
SBS  Chr59230362T-CHETINTERGENIC
SBS  Chr620045526G-CHETINTERGENIC
SBS  Chr77462760A-THETSYNONYMOUS_CODING
SBS  Chr813202035T-AHETINTERGENIC
SBS  Chr96625498A-THETINTERGENIC

Deletions: 12

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr125775749257757534LOC_Os01g45430
Deletion  Chr1224526202245262042
Deletion  Chr1214527759145277601
Deletion  Chr217246539172465478
Deletion  Chr23567638356764810
Deletion  Chr3285822682858228517
Deletion  Chr3185394581853947214LOC_Os03g32420
Deletion  Chr320978104209781117
Deletion  Chr430393096303930982
Deletion  Chr6310574253105744116
Deletion  Chr724019236240192404
Deletion  Chr810378555103785594

Insertions: 4

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr11371038837103882
Insertion  Chr1123050004230500042
Insertion  Chr212864063128640634
Insertion  Chr8791006979100691

Inversions: 4

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr12936549210059704LOC_Os12g16350
Inversion  Chr12936549210059704LOC_Os12g17550
Inversion  Chr82644483127950908LOC_Os08g41880
Inversion  Chr82795090928127951

Translocations: 6

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr118214811Chr228383194
Translocation  Chr129694980Chr118617754
Translocation  Chr1010312292Chr45525808
Translocation  Chr1122798819Chr529712030
Translocation  Chr822804012Chr216275328
Translocation  Chr1126996160Chr114672368