Mutant Information 

Mutant NameFN242-S  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 22

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr102484291G-AHOMOINTRON
SBS  Chr101496067A-GHETINTERGENIC
SBS  Chr1117833607G-THETINTERGENIC
SBS  Chr1222228950A-GHETINTERGENIC
SBS  Chr1214980045C-THOMONON_SYNONYMOUS_CODINGLOC_Os12g25830
SBS  Chr121795074G-AHETUTR_3_PRIME
SBS  Chr28141526G-AHOMOINTRON
SBS  Chr211402820A-GHOMOINTRON
SBS  Chr233766950T-CHOMOINTERGENIC
SBS  Chr219433089T-CHETINTERGENIC
SBS  Chr211403584C-GHOMONON_SYNONYMOUS_CODINGLOC_Os02g19510
SBS  Chr32083930G-CHETINTERGENIC
SBS  Chr46067787C-AHOMONON_SYNONYMOUS_CODINGLOC_Os04g11160
SBS  Chr422739386C-THETINTERGENIC
SBS  Chr413844302G-THOMOSYNONYMOUS_CODING
SBS  Chr413844301C-THOMONON_SYNONYMOUS_CODINGLOC_Os04g24190
SBS  Chr47451372C-THETNON_SYNONYMOUS_CODINGLOC_Os04g13390
SBS  Chr53579783C-THOMOINTERGENIC
SBS  Chr59736845G-CHETINTRON
SBS  Chr714036000T-AHETNON_SYNONYMOUS_CODINGLOC_Os07g24670
SBS  Chr71914112A-GHOMOUTR_3_PRIME
SBS  Chr711347787G-THETINTERGENIC

Deletions: 23

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr142150424421504328
Deletion  Chr1781556478155651
Deletion  Chr116529346165293526LOC_Os01g29488
Deletion  Chr1556948455694873
Deletion  Chr17799154779916410
Deletion  Chr1214772472147724731
Deletion  Chr1223785346237853471
Deletion  Chr12251849232518493411LOC_Os12g40680
Deletion  Chr121518467151848316
Deletion  Chr12197920111979202918
Deletion  Chr231208332312083386
Deletion  Chr21141284811424367115192
Deletion  Chr426575001266600008500017
Deletion  Chr41975999119760494503
Deletion  Chr42102900121074000450004
Deletion  Chr5116890011209400040500060
Deletion  Chr513112363131123652
Deletion  Chr69872543987260562
Deletion  Chr612675751126757543
Deletion  Chr721844642218446431
Deletion  Chr8211279421127962
Deletion  Chr8994307499456172543LOC_Os08g16290
Deletion  Chr82244806224482519

Inversions: 7

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr121764198217685018LOC_Os12g29660
Inversion  Chr121764199417685021LOC_Os12g29660
Inversion  Chr122614542726442173
Inversion  Chr72466540225778177LOC_Os07g41200
Inversion  Chr72466540225778177LOC_Os07g43030
Inversion  Chr875687719230699LOC_Os08g12780
Inversion  Chr882976619230707LOC_Os08g13880

Translocations: 3

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr88294523Chr3207219842
Translocation  Chr511687537Chr221279602
Translocation  Chr511689675Chr22127976LOC_Os02g04700