Mutant Information 

Mutant NameFN260-S  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability No


Variant Information 

Single base substitutions: 26

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr15653663G-AHOMOINTRON
SBS  Chr16403141G-AHETINTRON
SBS  Chr115630182C-THOMONON_SYNONYMOUS_CODINGLOC_Os01g27950
SBS  Chr135720755A-GHETNON_SYNONYMOUS_CODINGLOC_Os01g61750
SBS  Chr109871060G-AHETNON_SYNONYMOUS_CODINGLOC_Os10g19338
SBS  Chr101801348C-THOMOINTRON
SBS  Chr128876060A-THETINTERGENIC
SBS  Chr128876061C-THETINTERGENIC
SBS  Chr234527346A-THETNON_SYNONYMOUS_CODINGLOC_Os02g56390
SBS  Chr26395183A-GHOMOINTERGENIC
SBS  Chr219529837A-THETINTRON
SBS  Chr220526845G-THETNON_SYNONYMOUS_CODINGLOC_Os02g34300
SBS  Chr42361885C-AHETSYNONYMOUS_CODING
SBS  Chr45321588G-CHETINTRON
SBS  Chr47279312G-AHETINTRON
SBS  Chr422668530G-AHETINTERGENIC
SBS  Chr423494542A-GHETUTR_3_PRIME
SBS  Chr55169694C-THETINTERGENIC
SBS  Chr518395124A-THETUTR_3_PRIME
SBS  Chr514558289C-THETINTERGENIC
SBS  Chr512380270T-GHETINTERGENIC
SBS  Chr629862591C-THETINTERGENIC
SBS  Chr630835477G-AHETINTERGENIC
SBS  Chr612306322A-CHETINTERGENIC
SBS  Chr710385995C-THETINTERGENIC
SBS  Chr813883143C-THETINTERGENIC

Deletions: 20

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr1797260379726085
Deletion  Chr133743797337438036
Deletion  Chr125237181252371821LOC_Os01g44050
Deletion  Chr116662588166625957
Deletion  Chr24261104261177LOC_Os02g01765
Deletion  Chr225483889254863002411
Deletion  Chr24554920455493313
Deletion  Chr315508178155081857
Deletion  Chr315221692152217008
Deletion  Chr415984026159840271
Deletion  Chr4207725212077253615
Deletion  Chr413597904135979073LOC_Os04g23780
Deletion  Chr4197533021975332119
Deletion  Chr430285218302852235LOC_Os04g51140
Deletion  Chr516573182165731886
Deletion  Chr5184275961842760913
Deletion  Chr6780628478062906LOC_Os06g14030
Deletion  Chr71047849104786718LOC_Os07g02800
Deletion  Chr9425581542558161
Deletion  Chr99119746911975913

Insertions: 2

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr514209328142093282
Insertion  Chr71455532145553212

Inversions: 3

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr43192476432662824
Inversion  Chr72294611823092286LOC_Os07g38260
Inversion  Chr72294611823092286LOC_Os07g38430

Translocations: 6

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr95669480Chr217526282
Translocation  Chr710214552Chr68086664
Translocation  Chr723092004Chr5141483622
Translocation  Chr723092281Chr5141483252
Translocation  Chr1224256121Chr917570129LOC_Os09g28910
Translocation  Chr1224256984Chr917570113LOC_Os09g28910