Mutant Information 

Mutant NameFN378-S  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 19

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr16266590G-THOMOINTERGENIC
SBS  Chr113807116G-THETINTERGENIC
SBS  Chr116560679T-CHETINTERGENIC
SBS  Chr123110474C-THETINTERGENIC
SBS  Chr1116749525G-AHOMOINTERGENIC
SBS  Chr116371069G-THETINTERGENIC
SBS  Chr115452620T-CHETINTERGENIC
SBS  Chr11694955G-AHETINTERGENIC
SBS  Chr12541264C-AHETINTERGENIC
SBS  Chr1215959928T-CHOMOINTRON
SBS  Chr232394853T-AHOMOSPLICE_SITE_REGION
SBS  Chr311988939G-AHOMOINTERGENIC
SBS  Chr34835027G-AHOMOINTERGENIC
SBS  Chr515227733C-THETSYNONYMOUS_CODING
SBS  Chr56973322G-AHETINTERGENIC
SBS  Chr715855137C-AHETINTERGENIC
SBS  Chr716132711C-THETINTERGENIC
SBS  Chr728985807T-AHETUTR_5_PRIME
SBS  Chr77476504G-AHETNON_SYNONYMOUS_CODINGLOC_Os07g13040

Deletions: 12

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr1384009313840094211LOC_Os01g66120
Deletion  Chr136469694364696984
Deletion  Chr103911893391191017LOC_Os10g07400
Deletion  Chr11265540012711800056400080
Deletion  Chr1226268746262687504LOC_Os12g42280
Deletion  Chr121464798114648600619LOC_Os12g25390
Deletion  Chr221389933213899352
Deletion  Chr346662544666406152LOC_Os03g08980
Deletion  Chr327490061274900687
Deletion  Chr4145268014526844
Deletion  Chr5183930318393096
Deletion  Chr613162432131624397

Insertions: 1

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr713730586137305861

Inversions: 3

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr112711800327673217LOC_Os11g44810
Inversion  Chr112711800327673217LOC_Os11g45740
Inversion  Chr41185130813704655

Translocations: 4

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr22966114Chr1355880472
Translocation  Chr1126554178Chr1286069712
Translocation  Chr427553609Chr1286066102
Translocation  Chr1127673209Chr128612206LOC_Os11g45740