Mutant Information 

Mutant NameFN389-S  [Download]
Generation M2
Genus species Oryza sativa
Cultivar Kitaake
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 44

Variant Type

Chromosome

Start_pos

Change

Genotype

Effect

Gene affected

SBS  Chr15990995C-GHETNON_SYNONYMOUS_CODINGLOC_Os01g11170
SBS  Chr110361144G-AHETINTERGENIC
SBS  Chr124757078G-AHOMOINTRON
SBS  Chr125219404A-GHOMOINTERGENIC
SBS  Chr127172883C-AHOMOINTRON
SBS  Chr1011892183C-THETINTERGENIC
SBS  Chr1117199702A-GHETINTERGENIC
SBS  Chr1118916858T-CHETINTERGENIC
SBS  Chr119781411T-AHETINTERGENIC
SBS  Chr116159728C-THETINTERGENIC
SBS  Chr115832180C-THETSYNONYMOUS_CODING
SBS  Chr114963855G-AHETINTERGENIC
SBS  Chr111963973C-THETNON_SYNONYMOUS_CODINGLOC_Os11g04620
SBS  Chr1110974020A-GHETINTRON
SBS  Chr129734314A-GHETUTR_3_PRIME
SBS  Chr129736485C-THETINTERGENIC
SBS  Chr1211733740C-THETINTRON
SBS  Chr1214673412C-THETINTERGENIC
SBS  Chr1216096555T-CHETINTRON
SBS  Chr129181290A-GHETNON_SYNONYMOUS_CODINGLOC_Os12g16080
SBS  Chr23885992G-AHETINTERGENIC
SBS  Chr211458650C-THETSPLICE_SITE_DONORLOC_Os02g19620
SBS  Chr227699691G-AHETNON_SYNONYMOUS_CODINGLOC_Os02g45520
SBS  Chr229247359T-AHETINTERGENIC
SBS  Chr332249801G-CHOMOINTRON
SBS  Chr331342394C-THETINTERGENIC
SBS  Chr328970912C-GHETINTRON
SBS  Chr322401245T-AHETINTERGENIC
SBS  Chr413064750T-AHOMOINTERGENIC
SBS  Chr418655962G-AHETUTR_5_PRIME
SBS  Chr431533820T-AHETINTRON
SBS  Chr59890937G-AHETINTERGENIC
SBS  Chr510137944C-GHETINTERGENIC
SBS  Chr522476965G-THETINTERGENIC
SBS  Chr528043579G-AHETINTERGENIC
SBS  Chr515001822T-AHETINTERGENIC
SBS  Chr514264899G-AHETINTERGENIC
SBS  Chr630319125T-GHOMOINTERGENIC
SBS  Chr617186426G-AHOMOINTERGENIC
SBS  Chr710490348G-AHETINTERGENIC
SBS  Chr825614988G-THETINTRON
SBS  Chr85862175C-THETINTERGENIC
SBS  Chr85862173C-AHETINTERGENIC
SBS  Chr97241057G-THOMOSTOP_GAINEDLOC_Os09g12650

Deletions: 24

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Deletion  Chr1358777935877856LOC_Os01g07510
Deletion  Chr13953250339578748462457
Deletion  Chr1410835174108352811
Deletion  Chr11560094956009567LOC_Os11g10310
Deletion  Chr11184872411848726524
Deletion  Chr1224431615244316172
Deletion  Chr12257838232578383310
Deletion  Chr229764063297640663LOC_Os02g48620
Deletion  Chr3313406503134066616
Deletion  Chr311859842118598475
Deletion  Chr330386058303860591LOC_Os03g52970
Deletion  Chr413428363134283718
Deletion  Chr412115406121154137
Deletion  Chr45222035222052LOC_Os04g01810
Deletion  Chr4350204635020482
Deletion  Chr5161195461611956721
Deletion  Chr5153870011593700055000086
Deletion  Chr51869121869175LOC_Os05g01270
Deletion  Chr5163457701634578313
Deletion  Chr614231947142319558
Deletion  Chr614204088142040957
Deletion  Chr624531836245318371LOC_Os06g41070
Deletion  Chr75475475475492
Deletion  Chr922615814226158151

Insertions: 5

Variant Type

Chromosome

Start_pos

End_pos

Size(bp)

Number of genes

Insertion  Chr11876423987642392
Insertion  Chr1120774747207747476
Insertion  Chr1223551114235511142
Insertion  Chr6369677236967722
Insertion  Chr625007543250075432

Inversions: 1

Variant Type

Chromosome

Position1

Position2

Number of genes

Inversion  Chr1133948853680217LOC_Os11g06910

Translocations: 3

Variant Type

Chromosome

Position1

Chromosome

Position2

Number of genes

Translocation  Chr115152576Chr229247130
Translocation  Chr115154876Chr229247094LOC_Os11g09640
Translocation  Chr1122578430Chr83761938LOC_Os11g38070