FN1237-S Chr11 15238688 15238699 0 0 Deletion 11 LOC_Os11g26594 expressed protein FN1237-S Chr10 7004508 7004514 0 0 Deletion 6 LOC_Os10g12570 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1237-S Chr11 13560049 13560055 0 0 Deletion 6 LOC_Os11g23930 expressed protein FN1237-S Chr6 29381433 29381435 0 0 Deletion 2 LOC_Os06g48560 transferase family protein, putative, expressed FN1237-S Chr1 27743170 27743171 0 0 Deletion 1 LOC_Os01g48410 ATROPGEF7/ROPGEF7, putative, expressed FN1237-S Chr12 14594224 14594226 0 0 Deletion 2 LOC_Os12g25320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1237-S Chr10 7004504 7004510 0 0 Deletion 6 LOC_Os10g12570 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1237-S Chr2 16618602 16618618 0 0 Deletion 16 LOC_Os02g28074 XRN 5-3 exonuclease N-terminus family protein, expressed FN1237-S Chr6 23340890 23350765 0 0 Deletion 9875 LOC_Os06g39344 enoyl-CoA hydratase/isomerase family protein, putative, expressed FN1237-S Chr6 16170739 16186280 0 0 Deletion 15541 LOC_Os06g28430 retrotransposon, putative, centromere-specific, expressed FN1237-S Chr6 16170739 16186280 0 0 Deletion 15541 LOC_Os06g28440 retrotransposon, putative, centromere-specific FN1237-S Chr6 16170739 16186280 0 0 Deletion 15541 LOC_Os06g28450 retrotransposon protein, putative, unclassified FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14190 ARGOS, putative, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14200 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14210 hypothetical protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14220 tubulin/FtsZ domain containing protein, putative, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14230 uncharacterized protein yqxC, putative, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14240 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14250 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14260 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14270 transposon protein, putative, unclassified, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14280 transposon protein, putative, unclassified, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14290 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14300 la domain containing protein, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14310 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14320 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14330 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14360 retrotransposon, putative, centromere-specific FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14370 hypothetical protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14380 resistance protein LR10, putative, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14390 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14400 polygalacturonase, putative, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14410 polygalacturonase, putative, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14420 inactive receptor kinase At1g27190 precursor, putative, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14430 APOBEC1 complementation factor, putative, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14440 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14450 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14470 transposon protein, putative, unclassified FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14480 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14490 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14500 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14510 transposon protein, putative, unclassified, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14520 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14525 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14530 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14544 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14570 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14590 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14600 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14620 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14630 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14640 retrotransposon protein, putative, Ty3-gypsy subclass FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14670 transposon protein, putative, CACTA, En/Spm sub-class FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14680 hypothetical protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14690 hypothetical protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14700 hypothetical protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14710 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14720 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14730 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14740 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14750 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14760 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14770 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14780 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14790 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14810 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14820 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14830 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14840 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14860 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14870 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14880 LTPL32 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14890 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14900 thiol protease SEN102 precursor, putative, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14910 NADP-dependent oxidoreductase, putative, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14930 expressed protein FN1237-S Chr11 7937001 8414000 0 0 Deletion 477000 LOC_Os11g14940 expressed protein FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g14950 ACT domain containing protein, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g14960 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g14970 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g14980 pentatricopeptide, putative, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g14990 expressed protein FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15000 expressed protein FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15010 transposon protein, putative, Mutator sub-class, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15020 expressed protein FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15030 SAM dependent carboxyl methyltransferase, putative, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15040 S-adenosyl-L-methionine:benzoic acid/salicylic acid carboxyl methyltransferase, putative, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15050 expressed protein FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15060 SAM dependent carboxyl methyltransferase, putative, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15110 nucleic acid binding protein, putative, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15130 jasmonate O-methyltransferase, putative, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15140 retrotransposon, putative, centromere-specific, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15150 retrotransposon, putative, centromere-specific, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15170 transposon protein, putative, unclassified, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15180 SAM dependent carboxyl methyltransferase, putative, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15190 RGH1A, putative, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15200 expressed protein FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15210 anthocyanin regulatory Lc protein, putative, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15220 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr11 8419001 8598000 0 0 Deletion 179000 LOC_Os11g15230 expressed protein FN1237-S Chr11 17813258 17813264 0 0 Deletion 6 FN1237-S Chr7 7068746 7068751 0 0 Deletion 5 FN1237-S Chr3 27595635 27595637 0 0 Deletion 2 FN1237-S Chr9 20448391 20448393 0 0 Deletion 2 FN1237-S Chr11 14574914 14574916 0 0 Deletion 2 FN1237-S Chr8 17180333 17180334 0 0 Deletion 1 FN1237-S Chr4 19781130 19781131 0 0 Deletion 1 FN1237-S Chr4 25871348 25871349 0 0 Deletion 1 FN1237-S Chr7 3639960 3639961 0 0 Deletion 1 FN1237-S Chr8 923684 923685 0 0 Deletion 1 FN1237-S Chr9 4600385 4600386 0 0 Deletion 1 FN1237-S Chr10 10159437 10159438 0 0 Deletion 1 FN1237-S Chr11 9566368 9566369 0 0 Deletion 1 FN1237-S Chr1 157587 157589 0 0 Deletion 2 FN1237-S Chr9 3886913 3886915 0 0 Deletion 2 FN1237-S Chr4 18488361 18488364 0 0 Deletion 3 FN1237-S Chr4 35403860 35403865 0 0 Deletion 5 FN1237-S Chr1 15268508 15268515 0 0 Deletion 7 FN1237-S Chr11 20881666 20881678 0 0 Deletion 12 FN1237-S Chr11 16800946 16800969 0 0 Deletion 23 FN1237-S Chr1 20373142 20373184 0 0 Deletion 42 FN1237-S Chr6 14692310 14692364 0 0 Deletion 54 FN1237-S Chr1 15160551 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g27190 C2 domain containing protein, putative, expressed FN1237-S Chr1 21745466 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1237-S Chr1 29002398 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g50500 retrotransposon protein, putative, Ty3-gypsy subclass FN1237-S Chr2 1210721 T-A 0 0 Single Base Substitution 0 INTRON HET FN1237-S Chr2 1210724 T-A 0 0 Single Base Substitution 0 INTRON HET FN1237-S Chr2 1210726 T-A 0 0 Single Base Substitution 0 INTRON HET FN1237-S Chr2 12220737 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1237-S Chr2 20015412 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1237-S Chr2 27613581 T-C 0 0 Single Base Substitution 0 INTRON HET FN1237-S Chr2 28547995 A-T 0 0 Single Base Substitution 0 INTRON HET FN1237-S Chr2 30628596 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1237-S Chr2 35473470 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1237-S Chr3 17544340 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1237-S Chr4 15383769 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1237-S Chr4 21803671 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1237-S Chr4 26797463 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1237-S Chr4 27920078 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN1237-S Chr5 11760550 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1237-S Chr6 13754236 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1237-S Chr6 26894130 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1237-S Chr6 27456796 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1237-S Chr7 5689392 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1237-S Chr7 5689395 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1237-S Chr7 9891682 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1237-S Chr7 26171295 C-A 0 0 Single Base Substitution 0 INTRON HET FN1237-S Chr8 6546970 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g11130 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr8 17378774 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1237-S Chr8 22579590 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1237-S Chr8 26134625 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1237-S Chr9 1482076 C-T 0 0 Single Base Substitution 0 INTRON HET FN1237-S Chr9 17071614 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1237-S Chr10 486389 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g01750 retrotransposon protein, putative, unclassified, expressed FN1237-S Chr10 1294112 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g03080 retrotransposon protein, putative, unclassified FN1237-S Chr10 6253673 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN1237-S Chr10 21934193 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1237-S Chr12 16567305 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1237-S Chr12 19945007 C-T 0 0 Single Base Substitution 0 INTRON HET FN1237-S Chr3 36401809 36401809 0 0 Insertion 2 FN1237-S Chr5 5284988 5284988 0 0 Insertion 2 FN1237-S Chr12 17835352 17835352 0 0 Insertion 4 FN1237-S Chr3 32575446 32575446 0 0 Insertion 1 FN1237-S Chr7 11792515 11792515 0 0 Insertion 2 FN1237-S Chr1 20499424 20719375 0 0 Inversion 219951 LOC_Os01g36840 ATP-binding region, ATPase-like domain containing protein, expressed FN1237-S Chr1 20499424 20719375 0 0 Inversion 219951 LOC_Os01g37120 WD domain, G-beta repeat domain containing protein, expressed FN1237-S Chr1 20499442 20719376 0 0 Inversion 219934 LOC_Os01g36840 ATP-binding region, ATPase-like domain containing protein, expressed FN1237-S Chr1 20499442 20719376 0 0 Inversion 219934 LOC_Os01g37120 WD domain, G-beta repeat domain containing protein, expressed FN1237-S Chr10 217627 491215 0 0 Inversion 273588 LOC_Os10g01360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1237-S Chr10 217648 491219 0 0 Inversion 273571 LOC_Os10g01360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1237-S Chr10 21406807 21675531 0 0 Inversion 268724 FN1237-S Chr11 7023907 7937325 0 0 Inversion 913418 FN1237-S Chr7 18014460 18024459 0 0 Inversion 9999 LOC_Os07g30430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1237-S Chr9 4679544 4679811 0 0 Inversion 267 FN1237-S Chr9 21410464 21985106 0 0 Inversion 574642 LOC_Os09g37120 pyridoxal-dependent decarboxylase protein, putative, expressed