FN1402-S Chr1 33870874 33870887 0 0 Deletion 13 LOC_Os01g58580 ICE-like protease p20 domain containing protein, putative, expressed FN1402-S Chr6 25423022 25423030 0 0 Deletion 8 LOC_Os06g42330 expressed protein FN1402-S Chr3 14873255 14873259 0 0 Deletion 4 LOC_Os03g25970 KH domain-containing protein, putative, expressed FN1402-S Chr7 24393369 24393370 0 0 Deletion 1 LOC_Os07g40700 RNA methyltransferase, TrmH family protein, putative, expressed FN1402-S Chr8 7594029 7594030 0 0 Deletion 1 LOC_Os08g12820 proteasome/cyclosome repeat containing protein, expressed FN1402-S Chr5 26447216 26447218 0 0 Deletion 2 LOC_Os05g45630 retrotransposon protein, putative, Ty3-gypsy subclass FN1402-S Chr3 28601836 28601857 0 0 Deletion 21 LOC_Os03g50150 NB-ARC domain containing protein, expressed FN1402-S Chr1 28484416 28484446 0 0 Deletion 30 LOC_Os01g49529 OsWAK10d - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29400 OsFBX290 - F-box domain containing protein, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29440 retrotransposon, putative, centromere-specific, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29450 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29460 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29470 retrotransposon protein, putative, unclassified FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29480 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29490 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29500 histone-like transcription factor and archaeal histone, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29510 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29520 cytochrome b561, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29530 double-stranded RNA binding motif containing protein, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29540 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29550 retrotransposon protein, putative, unclassified FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29560 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29570 pleiotropic drug resistance protein 3, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29580 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29590 zinc finger, C3HC4 type family protein, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29600 seed maturation protein PM41, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29610 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29615 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29630 hypothetical protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29640 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29650 RNA recognition motif containing protein, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29660 WRKY69, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29669 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29680 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29690 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29700 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29710 galactosyltransferase family protein, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29720 mitochondrial carrier protein, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29730 intracellular protein transport protein USO1-related, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29740 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29750 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29760 membrane protein, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29770 endoglucanase, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29780 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29790 hypothetical protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29809 resistance protein LR10, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29830 transposon protein, putative, CACTA, En/Spm sub-class FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29840 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29854 RGH1A, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29870 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29880 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29900 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29910 prenyltransferase, putative FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29940 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29950 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29960 retrotransposon protein, putative, unclassified FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29970 para-hydroxybenzoate--polyprenyltransferase, mitochondrial precursor, putative FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29980 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g29990 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30014 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30020 membrane protein, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30040 transposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30050 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30060 proton pump interactor, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30070 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30080 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30090 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30095 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30100 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30110 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30140 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30150 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30160 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30170 expressed protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30180 transposon protein, putative, unclassified, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30210 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30220 retrotransposon protein, putative, unclassified FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30230 conserved hypothetical protein FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30240 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1402-S Chr8 18029408 18617031 0 0 Deletion 587623 LOC_Os08g30260 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr7 20516001 20610000 0 0 Deletion 94000 LOC_Os07g34270 expressed protein FN1402-S Chr7 20516001 20610000 0 0 Deletion 94000 LOC_Os07g34280 CXE carboxylesterase, putative, expressed FN1402-S Chr7 20516001 20610000 0 0 Deletion 94000 LOC_Os07g34290 expressed protein FN1402-S Chr7 20516001 20610000 0 0 Deletion 94000 LOC_Os07g34300 retrotransposon protein, putative, unclassified FN1402-S Chr7 20516001 20610000 0 0 Deletion 94000 LOC_Os07g34310 transposon protein, putative, unclassified, expressed FN1402-S Chr7 20516001 20610000 0 0 Deletion 94000 LOC_Os07g34320 nodulin, putative, expressed FN1402-S Chr7 20516001 20610000 0 0 Deletion 94000 LOC_Os07g34330 expressed protein FN1402-S Chr7 20516001 20610000 0 0 Deletion 94000 LOC_Os07g34340 conserved hypothetical protein FN1402-S Chr7 20516001 20610000 0 0 Deletion 94000 LOC_Os07g34350 retrotransposon protein, putative, unclassified FN1402-S Chr7 20516001 20610000 0 0 Deletion 94000 LOC_Os07g34360 expressed protein FN1402-S Chr7 20516001 20610000 0 0 Deletion 94000 LOC_Os07g34370 gibberellin receptor, putative, expressed FN1402-S Chr7 20516001 20610000 0 0 Deletion 94000 LOC_Os07g34380 hypothetical protein FN1402-S Chr6 21890069 21890079 0 0 Deletion 10 FN1402-S Chr3 22170678 22170680 0 0 Deletion 2 FN1402-S Chr3 36203679 36203681 0 0 Deletion 2 FN1402-S Chr5 5207922 5207924 0 0 Deletion 2 FN1402-S Chr6 29130188 29130190 0 0 Deletion 2 FN1402-S Chr10 13155438 13155440 0 0 Deletion 2 FN1402-S Chr10 17944359 17944360 0 0 Deletion 1 FN1402-S Chr10 22443393 22443394 0 0 Deletion 1 FN1402-S Chr10 18051150 18051151 0 0 Deletion 1 FN1402-S Chr12 20728406 20728407 0 0 Deletion 1 FN1402-S Chr1 25167399 25167401 0 0 Deletion 2 FN1402-S Chr5 2394836 2394841 0 0 Deletion 5 FN1402-S Chr12 12964045 12964057 0 0 Deletion 12 FN1402-S Chr11 13473262 13473280 0 0 Deletion 18 FN1402-S Chr11 9868919 9868941 0 0 Deletion 22 FN1402-S Chr3 24989477 24989502 0 0 Deletion 25 FN1402-S Chr8 18968182 18968214 0 0 Deletion 32 FN1402-S Chr1 9903164 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr1 22496312 C-T 0 0 Single Base Substitution 0 INTRON HET FN1402-S Chr1 24954639 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1402-S Chr1 27863038 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr2 18786646 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr3 982835 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr3 3938180 T-C 0 0 Single Base Substitution 0 INTRON HET FN1402-S Chr3 8105683 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr3 16340082 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr3 18824819 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr3 22975092 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr3 24989988 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr3 24991176 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr3 24991177 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr3 32364484 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1402-S Chr4 8469938 T-G 0 0 Single Base Substitution 0 INTRON HOMO FN1402-S Chr4 26894590 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1402-S Chr5 5726055 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g10530 retrotransposon protein, putative, unclassified, expressed FN1402-S Chr5 17063136 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr5 20981201 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1402-S Chr6 10603725 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr6 12812975 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr6 23511530 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1402-S Chr6 25266108 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr7 12965102 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr7 13850780 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr8 1664773 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr8 12662237 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1402-S Chr8 18028522 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g29400 OsFBX290 - F-box domain containing protein, expressed FN1402-S Chr8 18028523 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g29400 OsFBX290 - F-box domain containing protein, expressed FN1402-S Chr9 2945844 G-A 0 0 Single Base Substitution 0 INTRON HET FN1402-S Chr9 2945846 T-A 0 0 Single Base Substitution 0 INTRON HET FN1402-S Chr9 16481139 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1402-S Chr10 17147353 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr10 18941317 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN1402-S Chr11 13860190 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g24330 retrotransposon protein, putative, Ty1-copia subclass FN1402-S Chr11 13933289 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN1402-S Chr11 14196339 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN1402-S Chr11 17312135 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr11 21215932 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g36090 receptor kinase, putative, expressed FN1402-S Chr12 1898014 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN1402-S Chr12 10225568 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1402-S Chr1 36411822 36411822 0 0 Insertion 1 FN1402-S Chr5 21974748 21974748 0 0 Insertion 2 FN1402-S Chr10 15621383 15621383 0 0 Insertion 2 LOC_Os10g30080 xylosyltransferase, putative, expressed FN1402-S Chr1 23218418 23218418 0 0 Insertion 1 FN1402-S Chr4 5642535 5642535 0 0 Insertion 1 FN1402-S Chr6 29432069 29432069 0 0 Insertion 2 FN1402-S Chr11 2547058 2547058 0 0 Insertion 1 FN1402-S Chr11 4807214 4807214 0 0 Insertion 2 FN1402-S Chr1 22498523 22538730 0 0 Inversion 40207 LOC_Os01g39890 transposon protein, putative, unclassified, expressed FN1402-S Chr1 22498523 22538730 0 0 Inversion 40207 LOC_Os01g39960 lycopene epsilon cyclase, chloroplast precursor, putative, expressed FN1402-S Chr1 22498590 22538757 0 0 Inversion 40167 LOC_Os01g39890 transposon protein, putative, unclassified, expressed FN1402-S Chr8 2417257 3283954 0 0 Inversion 866697 LOC_Os08g04810 serine esterase family protein, putative, expressed FN1402-S Chr8 2417257 3283954 0 0 Inversion 866697 LOC_Os08g06010 transporter, major facilitator family, putative, expressed FN1402-S Chr8 3283962 27671534 0 0 Inversion 24387572 LOC_Os08g06010 transporter, major facilitator family, putative, expressed FN1402-S Chr8 3283962 27671534 0 0 Inversion 24387572 LOC_Os08g43880 expressed protein FN1402-S Chr8 17475762 18617008 0 0 Inversion 1141246 LOC_Os08g28600 resistance protein, putative, expressed FN1402-S Chr10 17884836 17885061 0 0 Tandem-Duplication 225