FN1643-S Chr4 35074674 35074677 0 0 Deletion 3 LOC_Os04g58960 regulator of chromosome condensation, putative, expressed FN1643-S Chr7 9626714 9626719 0 0 Deletion 5 LOC_Os07g16430 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr2 417028 417043 0 0 Deletion 15 LOC_Os02g01740 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed FN1643-S Chr11 19355565 19355581 0 0 Deletion 16 LOC_Os11g32759 expressed protein FN1643-S Chr11 19355565 19355581 0 0 Deletion 16 LOC_Os11g32750 hydrolase, NUDIX family, domain containing protein, expressed FN1643-S Chr1 45255 45833 0 0 Deletion 578 LOC_Os01g01090 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr8 18593791 18593813 0 0 Deletion 22 LOC_Os08g30250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1643-S Chr2 14555177 14555197 0 0 Deletion 20 LOC_Os02g25070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr4 9927191 9927206 0 0 Deletion 15 LOC_Os04g18020 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr8 3021639 3021647 0 0 Deletion 8 LOC_Os08g05650 diacylglycerol kinase, putative, expressed FN1643-S Chr2 7620099 7620106 0 0 Deletion 7 LOC_Os02g13965 lectin protein kinase family protein, putative, expressed FN1643-S Chr5 25935287 25935288 0 0 Deletion 1 LOC_Os05g44570 histidine-containing phosphotransfer protein, putative, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15620 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15630 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15640 CRR4, putative, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15650 expressed protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15660 retrotransposon protein, putative, LINE subclass FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15670 peroxiredoxin, putative, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15680 phospholipase D, putative, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15690 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15700 transposon protein, putative, unclassified FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15710 transposon protein, putative, unclassified, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15720 hypothetical protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15750 retrotransposon protein, putative, Ty3-gypsy subclass FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15770 CCT motif family protein, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15780 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15800 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15820 expressed protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15830 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15840 retrotransposon, putative, centromere-specific, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15850 retrotransposon protein, putative, Ty1-copia subclass FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15860 expressed protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15870 expressed protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15880 mitochondrial prohibitin complex protein 2, putative, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15890 retrotransposon protein, putative, Ty1-copia subclass FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15910 expressed protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15920 expressed protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15930 legume lectins beta domain containing protein, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15940 legume lectins beta domain containing protein, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15950 expressed protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15959 expressed protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15970 erythronate-4-phosphate dehydrogenase domain containing protein, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15980 expressed protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g15990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16010 retrotransposon protein, putative, Ty3-gypsy subclass FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16030 expressed protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16040 erythronate-4-phosphate dehydrogenase domain containing protein, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16054 hypothetical protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16070 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16080 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16090 retrotransposon protein, putative, unclassified FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16100 retrotransposon protein, putative, unclassified FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16110 retrotransposon protein, putative, Ty3-gypsy subclass FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16120 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16130 acetyltransferase, GNAT family, putative, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16140 FAD binding protein, putative, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16150 expressed protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16160 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16170 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16180 hypothetical protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16190 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16210 expressed protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16224 piwi domain containing protein, putative, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16250 retrotransposon protein, putative, unclassified FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16260 expressed protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16270 hypothetical protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16280 retrotransposon, putative, centromere-specific, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16290 retrotransposon protein, putative, unclassified FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16320 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16330 expressed protein FN1643-S Chr7 9049001 9551000 0 0 Deletion 502000 LOC_Os07g16350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16360 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16364 expressed protein FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16380 expressed protein FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16410 transposon protein, putative, unclassified FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16420 OsFBX232 - F-box domain containing protein, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16430 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16440 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16450 transposon protein, putative, unclassified FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16470 transposon protein, putative, unclassified FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16500 retrotransposon, putative, centromere-specific FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16510 retrotransposon, putative, centromere-specific, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16530 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16550 transposon protein, putative, unclassified FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16580 retrotransposon protein, putative, Ty3-gypsy subclass FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16600 expressed protein FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16610 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16620 retrotransposon protein, putative, Ty1-copia subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16640 retrotransposon protein, putative, unclassified FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16660 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16670 retrotransposon protein, putative, unclassified FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16680 retrotransposon protein, putative, Ty1-copia subclass FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16700 retrotransposon protein, putative, Ty3-gypsy subclass FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16710 retrotransposon protein, putative, Ty3-gypsy subclass FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16730 retrotransposon protein, putative, Ty1-copia subclass FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16740 expressed protein FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16750 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16760 expressed protein FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16780 retrotransposon protein, putative, Ty3-gypsy subclass FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16790 expressed protein FN1643-S Chr7 9553001 9860000 0 0 Deletion 307000 LOC_Os07g16800 OsFBX233 - F-box domain containing protein, expressed FN1643-S Chr11 20276090 20276091 0 0 Deletion 1 FN1643-S Chr12 18617257 18617258 0 0 Deletion 1 FN1643-S Chr7 26435306 26435308 0 0 Deletion 2 FN1643-S Chr8 928388 928390 0 0 Deletion 2 FN1643-S Chr2 27759939 27759942 0 0 Deletion 3 FN1643-S Chr5 5999772 5999775 0 0 Deletion 3 FN1643-S Chr12 27048572 27048579 0 0 Deletion 7 FN1643-S Chr2 35043532 35043540 0 0 Deletion 8 FN1643-S Chr10 18630221 18630329 0 0 Deletion 108 FN1643-S Chr4 21253865 21253893 0 0 Deletion 28 FN1643-S Chr1 15591773 15591792 0 0 Deletion 19 FN1643-S Chr10 16636909 16636918 0 0 Deletion 9 FN1643-S Chr8 14042157 14042164 0 0 Deletion 7 FN1643-S Chr7 3833363 3833369 0 0 Deletion 6 FN1643-S Chr7 5511122 5511128 0 0 Deletion 6 FN1643-S Chr5 16627534 16627539 0 0 Deletion 5 FN1643-S Chr8 18984781 18984785 0 0 Deletion 4 FN1643-S Chr4 20179510 20179511 0 0 Deletion 1 FN1643-S Chr7 19744961 19744962 0 0 Deletion 1 FN1643-S Chr7 22327546 22327547 0 0 Deletion 1 FN1643-S Chr11 7032097 7032098 0 0 Deletion 1 FN1643-S Chr1 12624972 C-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN1643-S Chr2 28078700 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1643-S Chr2 32764606 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os02g53550 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr3 9747761 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN1643-S Chr3 11535767 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1643-S Chr3 17695303 T-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN1643-S Chr3 19977181 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1643-S Chr4 3942177 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1643-S Chr4 9968070 T-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1643-S Chr4 19997521 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1643-S Chr4 21783113 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1643-S Chr6 1143053 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g03090 expressed protein FN1643-S Chr6 1143055 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g03090 expressed protein FN1643-S Chr6 14721161 G-A 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os06g25160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr6 16196322 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN1643-S Chr6 24321462 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN1643-S Chr7 3566915 A-T 0 0 Single Base Substitution 0 INTRON HET FN1643-S Chr7 12400829 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1643-S Chr7 15796414 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1643-S Chr7 24782346 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1643-S Chr9 5495450 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g10080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1643-S Chr9 9593480 C-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN1643-S Chr9 14756658 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1643-S Chr10 13550943 T-C 0 0 Single Base Substitution 0 INTRON Homo FN1643-S Chr10 15446396 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN1643-S Chr11 11477660 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN1643-S Chr11 23768054 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os11g39870 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr12 9258164 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1643-S Chr12 14481630 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1643-S Chr12 14481631 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1643-S Chr12 17634884 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1643-S Chr12 17668506 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1643-S Chr1 20477927 20477927 0 0 Insertion 2 FN1643-S Chr2 20405050 20405050 0 0 Insertion 14 FN1643-S Chr2 24564784 24564784 0 0 Insertion 63 FN1643-S Chr3 4217165 4217165 0 0 Insertion 1 LOC_Os03g08284 expressed protein FN1643-S Chr5 14565839 14565839 0 0 Insertion 1 FN1643-S Chr6 21869148 21869148 0 0 Insertion 1 FN1643-S Chr7 5994282 5994282 0 0 Insertion 1 FN1643-S Chr9 22585868 22585868 0 0 Insertion 1 LOC_Os09g39290 retrotransposon protein, putative, unclassified, expressed FN1643-S Chr11 7577151 7577151 0 0 Insertion 8 FN1643-S Chr9 12145847 Chr8 28305112 0 Translocation 0 LOC_Os08g45080 expressed protein FN1643-S Chr9 16737914 Chr7 1125155 0 Translocation 0 LOC_Os09g27540 C2 domain containing protein, expressed