FN1646-S Chr12 5525432 5525442 0 0 Deletion 10 LOC_Os12g10430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN1646-S Chr7 8064178 8064182 0 0 Deletion 4 LOC_Os07g14130 pectinesterase inhibitor domain containing protein, expressed FN1646-S Chr3 25859666 25859667 0 0 Deletion 1 LOC_Os03g45779 expressed protein FN1646-S Chr3 1943491 1943492 0 0 Deletion 1 FN1646-S Chr1 38904274 38904276 0 0 Deletion 2 FN1646-S Chr1 42289269 42289271 0 0 Deletion 2 FN1646-S Chr5 21899887 21899889 0 0 Deletion 2 FN1646-S Chr4 11760723 11760726 0 0 Deletion 3 FN1646-S Chr5 20495462 20495465 0 0 Deletion 3 FN1646-S Chr9 4559945 4559948 0 0 Deletion 3 FN1646-S Chr1 38075994 38075998 0 0 Deletion 4 FN1646-S Chr1 34513856 34513868 0 0 Deletion 12 FN1646-S Chr3 11157832 11157846 0 0 Deletion 14 FN1646-S Chr3 2595408 2595427 0 0 Deletion 19 FN1646-S Chr5 12558658 12558678 0 0 Deletion 20 FN1646-S Chr7 17219209 17220876 0 0 Deletion 1667 FN1646-S Chr9 5166966 5167019 0 0 Deletion 53 FN1646-S Chr2 9534895 9534917 0 0 Deletion 22 FN1646-S Chr8 11839660 11839676 0 0 Deletion 16 FN1646-S Chr7 15643340 15643353 0 0 Deletion 13 FN1646-S Chr12 4560232 4560245 0 0 Deletion 13 FN1646-S Chr11 13137881 13137893 0 0 Deletion 12 FN1646-S Chr9 18543215 18543226 0 0 Deletion 11 FN1646-S Chr2 12266196 12266204 0 0 Deletion 8 FN1646-S Chr3 16747972 16747980 0 0 Deletion 8 FN1646-S Chr4 12527012 12527020 0 0 Deletion 8 FN1646-S Chr4 20618522 20618529 0 0 Deletion 7 FN1646-S Chr4 17092637 17092641 0 0 Deletion 4 FN1646-S Chr5 11621156 11621158 0 0 Deletion 2 FN1646-S Chr12 23632025 23632027 0 0 Deletion 2 FN1646-S Chr1 26704539 26704540 0 0 Deletion 1 FN1646-S Chr2 16731412 16731413 0 0 Deletion 1 FN1646-S Chr4 17582026 17582027 0 0 Deletion 1 FN1646-S Chr7 15381541 15381542 0 0 Deletion 1 FN1646-S Chr8 21813709 21813710 0 0 Deletion 1 FN1646-S Chr9 22711497 22711498 0 0 Deletion 1 FN1646-S Chr11 11283781 11283782 0 0 Deletion 1 FN1646-S Chr12 10958531 10958532 0 0 Deletion 1 FN1646-S Chr1 12257844 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1646-S Chr1 29097901 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN1646-S Chr2 14667059 C-T 0 0 Single Base Substitution 0 INTRON HET FN1646-S Chr2 17877305 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1646-S Chr3 14053017 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1646-S Chr3 14199040 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1646-S Chr4 3002231 G-C 0 0 Single Base Substitution 0 INTRON HET FN1646-S Chr4 10751234 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1646-S Chr4 11128616 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN1646-S Chr4 14467616 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1646-S Chr4 32918719 T-A 0 0 Single Base Substitution 0 INTRON HET FN1646-S Chr5 20495472 C-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN1646-S Chr5 26010938 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g44740 transposon protein, putative, unclassified, expressed FN1646-S Chr7 10472637 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1646-S Chr7 22087409 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1646-S Chr8 2830510 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN1646-S Chr8 2830511 T-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN1646-S Chr9 2061682 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1646-S Chr9 2941905 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN1646-S Chr9 3771714 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN1646-S Chr9 20519470 C-T 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN1646-S Chr9 22635926 C-T 0 0 Single Base Substitution 0 START_GAINED HET LOC_Os09g39360 expressed protein FN1646-S Chr10 20074557 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN1646-S Chr11 18913826 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN1646-S Chr11 24841923 C-G 0 0 Single Base Substitution 0 INTRON HET FN1646-S Chr12 8752602 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN1646-S Chr8 10641546 10641546 0 0 Insertion 6 FN1646-S Chr1 7232182 7232182 0 0 Insertion 4 FN1646-S Chr1 40423363 40423363 0 0 Insertion 26 FN1646-S Chr3 12038207 12038207 0 0 Insertion 71 FN1646-S Chr4 2323057 2323057 0 0 Insertion 3 FN1646-S Chr6 23346755 23346755 0 0 Insertion 3 FN1646-S Chr7 12243299 12243299 0 0 Insertion 1 FN1646-S Chr7 21699882 21699882 0 0 Insertion 16 FN1646-S Chr8 5137098 5137098 0 0 Insertion 1 FN1646-S Chr8 6003459 6003459 0 0 Insertion 2 FN1646-S Chr10 11405611 11405611 0 0 Insertion 4 FN1646-S Chr11 15836071 15836071 0 0 Insertion 20 FN1646-S Chr12 1542159 3339422 0 0 Inversion 1797263 LOC_Os12g03790 rhamnogalacturonate lyase, putative, expressed FN1646-S Chr12 1542159 3339422 0 0 Inversion 1797263 LOC_Os12g06870 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed FN1646-S Chr12 1542173 3339411 0 0 Inversion 1797238 LOC_Os12g03790 rhamnogalacturonate lyase, putative, expressed FN1646-S Chr12 1542173 3339411 0 0 Inversion 1797238 LOC_Os12g06870 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed FN1646-S Chr12 14631624 14853206 0 0 Inversion 221582 FN1646-S Chr7 15575748 16361517 0 0 Inversion 785769 LOC_Os07g28050 retrotransposon protein, putative, unclassified, expressed FN1646-S Chr7 15579235 16361516 0 0 Inversion 782281 LOC_Os07g28050 retrotransposon protein, putative, unclassified, expressed FN1646-S Chr6 15747401 Chr4 19596843 0 Translocation 0 FN1646-S Chr9 4078638 Chr3 28990577 0 Translocation 0 LOC_Os03g50780 PHD-finger domain containing protein, putative, expressed FN1646-S Chr9 4079465 Chr3 28990533 0 Translocation 0 LOC_Os03g50780 PHD-finger domain containing protein, putative, expressed FN1646-S Chr12 9725470 Chr9 13612940 0 Translocation 0 FN1646-S Chr7 15579233 17220862 0 0 Tandem-Duplication 1641629