FN2618-S Chr1 20174834 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g36370 transposon protein, putative, unclassified, expressed FN2618-S Chr2 4898817 A-G 0 0 Single Base Substitution 0 HET FN2618-S Chr2 6276980 C-T 0 0 Single Base Substitution 0 HET FN2618-S Chr2 33146901 C-A 0 0 Single Base Substitution 0 Homo FN2618-S Chr3 11069172 G-T 0 0 Single Base Substitution 0 HET FN2618-S Chr3 23921290 C-G 0 0 Single Base Substitution 0 HET FN2618-S Chr3 24282045 T-C 0 0 Single Base Substitution 0 HET FN2618-S Chr3 29595502 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g51680 fanconi anemia L, putative, expressed FN2618-S Chr3 30346717 G-T 0 0 Single Base Substitution 0 HET FN2618-S Chr4 4723067 A-T 0 0 Single Base Substitution 0 HET FN2618-S Chr4 6560999 G-A 0 0 Single Base Substitution 0 HET FN2618-S Chr4 6561001 G-A 0 0 Single Base Substitution 0 HET FN2618-S Chr4 6561003 C-A 0 0 Single Base Substitution 0 HET FN2618-S Chr4 14376167 G-A 0 0 Single Base Substitution 0 HET FN2618-S Chr4 14892101 G-C 0 0 Single Base Substitution 0 HET FN2618-S Chr4 18316970 G-C 0 0 Single Base Substitution 0 HET FN2618-S Chr4 24503045 C-T 0 0 Single Base Substitution 0 Homo FN2618-S Chr4 24546838 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g41400 peptide transporter PTR2, putative, expressed FN2618-S Chr4 26340895 C-T 0 0 Single Base Substitution 0 Homo FN2618-S Chr4 27851512 A-G 0 0 Single Base Substitution 0 HET FN2618-S Chr4 34552812 T-C 0 0 Single Base Substitution 0 HET FN2618-S Chr5 5506449 G-A 0 0 Single Base Substitution 0 HET FN2618-S Chr5 10433288 C-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os05g18160 retrotransposon protein, putative, unclassified FN2618-S Chr5 10519902 A-T 0 0 Single Base Substitution 0 HET FN2618-S Chr6 1337720 G-A 0 0 Single Base Substitution 0 HET FN2618-S Chr6 10983374 A-G 0 0 Single Base Substitution 0 HET FN2618-S Chr6 21831826 G-A 0 0 Single Base Substitution 0 HET FN2618-S Chr7 10397571 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g17610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2618-S Chr7 11513048 G-A 0 0 Single Base Substitution 0 HET FN2618-S Chr7 14898546 T-C 0 0 Single Base Substitution 0 HET FN2618-S Chr7 21276557 G-C 0 0 Single Base Substitution 0 HET FN2618-S Chr7 29425318 G-A 0 0 Single Base Substitution 0 HET FN2618-S Chr8 16739552 A-G 0 0 Single Base Substitution 0 HET FN2618-S Chr8 21257212 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g33950 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr8 21257213 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g33950 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr8 26844368 C-T 0 0 Single Base Substitution 0 HET FN2618-S Chr9 647108 T-C 0 0 Single Base Substitution 0 HET FN2618-S Chr9 2715463 T-C 0 0 Single Base Substitution 0 HET FN2618-S Chr9 4007632 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g07880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2618-S Chr9 6514077 G-A 0 0 Single Base Substitution 0 HET FN2618-S Chr9 18061832 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g29700 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr9 21535805 G-C 0 0 Single Base Substitution 0 HET FN2618-S Chr10 6208794 T-C 0 0 Single Base Substitution 0 HET FN2618-S Chr10 8376376 C-T 0 0 Single Base Substitution 0 HET FN2618-S Chr10 8697830 C-G 0 0 Single Base Substitution 0 HET FN2618-S Chr10 13856162 T-A 0 0 Single Base Substitution 0 HET FN2618-S Chr10 18504645 G-A 0 0 Single Base Substitution 0 HET FN2618-S Chr11 10722326 T-C 0 0 Single Base Substitution 0 HET FN2618-S Chr11 12882918 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os11g22430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2618-S Chr11 14296394 G-T 0 0 Single Base Substitution 0 Homo FN2618-S Chr11 24869668 G-A 0 0 Single Base Substitution 0 HET FN2618-S Chr11 26712618 C-T 0 0 Single Base Substitution 0 HET FN2618-S Chr12 1242581 T-A 0 0 Single Base Substitution 0 HET FN2618-S Chr12 2626129 T-C 0 0 Single Base Substitution 0 HET FN2618-S Chr12 22341289 A-G 0 0 Single Base Substitution 0 HET FN2618-S Chr12 22736942 C-T 0 0 Single Base Substitution 0 HET FN2618-S Chr4 13171175 13171178 0 0 Insertion 3 HET FN2618-S Chr9 12676316 12676321 0 0 Insertion 5 HET FN2618-S Chr4 8749036 8749037 0 0 Insertion 1 HET FN2618-S Chr2 2356303 2356304 0 0 Deletion 1 frameshift_variant HET LOC_Os02g04980 transposon protein, putative, unclassified, expressed FN2618-S Chr4 8486578 8486583 0 0 Deletion 5 frameshift_variant HET LOC_Os04g15610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2618-S Chr5 6860244 6860247 0 0 Deletion 3 HET FN2618-S Chr5 11220625 11220626 0 0 Deletion 1 HET FN2618-S Chr6 5923718 5923720 0 0 Deletion 2 Homo FN2618-S Chr7 28828184 28828185 0 0 Deletion 1 HET FN2618-S Chr8 16361488 16361507 0 0 Deletion 19 HET FN2618-S Chr12 5536449 5536463 0 0 Deletion 14 frameshift_variant HET LOC_Os12g10440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2618-S Chr4 4656001 4664000 0 0 Deletion 7999 FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33410 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33420 ATPase, AAA family protein, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33430 E2F family transcription factor protein, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33440 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33450 peroxiredoxin, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33460 transposon protein, putative, Mutator sub-class, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33470 transposon protein, putative, Pong sub-class, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33480 transposon protein, putative, Pong sub-class, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33490 inorganic H+ pyrophosphatase, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33500 threonyl-tRNA synthetase, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33510 retrotransposon protein, putative, Ty3-gypsy subclass FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33520 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33530 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33540 translational activator family protein, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33550 harpin-induced protein 1 domain containing protein, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33560 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33570 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33580 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33590 U-box domain-containing protein, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33600 VQ domain containing protein, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33610 metallo-beta-lactamase, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33620 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33630 WD domain, G-beta repeat domain containing protein, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33640 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33650 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33660 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33670 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33680 U-box domain containing protein, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33690 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33700 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33705 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33710 decarboxylase, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33720 RING-H2 finger protein, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33730 ubiquinol-cytochrome C reductase hinge protein, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33740 GPI-anchored protein, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33750 transposon protein, putative, unclassified, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33770 homeodomain, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33780 serine-aspartate repeat-containing protein I precursor, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33790 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33800 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33810 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33820 abscisic stress-ripening, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33830 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33840 OsFBX52 - F-box domain containing protein, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33850 elongation factor Tu family protein, putative, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33860 WD domain, G-beta repeat domain containing protein, expressed FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33890 expressed protein FN2618-S Chr2 19846001 20206000 0 0 Deletion 359999 LOC_Os02g33900 transposon protein, putative, unclassified, expressed FN2618-S Chr2 20213001 20287000 0 0 Deletion 73999 LOC_Os02g33910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2618-S Chr2 20213001 20287000 0 0 Deletion 73999 LOC_Os02g33920 transposon protein, putative, unclassified FN2618-S Chr2 20213001 20287000 0 0 Deletion 73999 LOC_Os02g33930 expressed protein FN2618-S Chr2 20213001 20287000 0 0 Deletion 73999 LOC_Os02g33944 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2618-S Chr2 20213001 20287000 0 0 Deletion 73999 LOC_Os02g33960 retrotransposon protein, putative, Ty1-copia subclass FN2618-S Chr2 20213001 20287000 0 0 Deletion 73999 LOC_Os02g33970 retrotransposon protein, putative, Ty1-copia subclass FN2618-S Chr2 20213001 20287000 0 0 Deletion 73999 LOC_Os02g33980 expressed protein FN2618-S Chr2 20298001 20376000 0 0 Deletion 77999 LOC_Os02g34010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2618-S Chr2 20298001 20376000 0 0 Deletion 77999 LOC_Os02g34020 transposon protein, putative, CACTA, En/Spm sub-class FN2618-S Chr2 20298001 20376000 0 0 Deletion 77999 LOC_Os02g34030 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr2 20298001 20376000 0 0 Deletion 77999 LOC_Os02g34040 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2618-S Chr2 20298001 20376000 0 0 Deletion 77999 LOC_Os02g34060 expressed protein FN2618-S Chr2 20298001 20376000 0 0 Deletion 77999 LOC_Os02g34070 expressed protein FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14690 flavin-containing monooxygenase family protein, putative, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14710 flavin-containing monooxygenase family protein, putative, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14730 expressed protein FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14740 expressed protein FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14750 expressed protein FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14760 phosphoglycerate mutase, putative, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14770 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14780 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14790 FAD dependent oxidoreductase domain containing protein, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14810 3-5 exonuclease domain-containing protein, putative, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14820 expressed protein FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14840 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14860 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14870 retrotransposon protein, putative, unclassified FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14880 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14930 retrotransposon protein, putative, Ty1-copia subclass FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14940 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14950 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2618-S Chr4 8246001 8414000 0 0 Deletion 167999 LOC_Os04g14970 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2618-S Chr4 8423001 8467000 0 0 Deletion 43999 LOC_Os04g14990 BURP domain containing protein, expressed FN2618-S Chr4 8423001 8467000 0 0 Deletion 43999 LOC_Os04g15000 expressed protein FN2618-S Chr4 8423001 8467000 0 0 Deletion 43999 LOC_Os04g15510 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr4 8423001 8467000 0 0 Deletion 43999 LOC_Os04g15520 retrotransposon protein, putative, unclassified FN2618-S Chr4 8423001 8467000 0 0 Deletion 43999 LOC_Os04g15530 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2618-S Chr4 8423001 8467000 0 0 Deletion 43999 LOC_Os04g15550 expressed protein FN2618-S Chr4 8423001 8467000 0 0 Deletion 43999 LOC_Os04g15560 protein kinase, putative, expressed FN2618-S Chr4 8423001 8467000 0 0 Deletion 43999 LOC_Os04g15570 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr4 6360533 6622248 0 0 Inversion 0 LOC_Os04g11620 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr4 6360533 6622208 0 0 Inversion 0 LOC_Os04g11620 retrotransposon protein, putative, unclassified, expressed FN2618-S Chr11 15480754 15537296 0 0 Inversion 0 FN2618-S Chr11 15480777 15537307 0 0 Inversion 0 FN2618-S Chr12 22217310 22399683 0 0 Inversion 0 LOC_Os12g36270 expressed protein FN2618-S Chr4 6360533 6622248 0 0 Inversion 0 LOC_Os04g12050 retrotransposon, putative, centromere-specific FN2618-S Chr4 8943790 Chr1 2012126 0 Translocation 0 FN2618-S Chr8 23386247 Chr7 24488804 0 Translocation 0 FN2618-S Chr11 7230487 Chr4 4655620 0 Translocation 0 LOC_Os11g12770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2618-S Chr12 13051680 Chr10 2755954 0 Translocation 0