FN2753-S Chr1 15824176 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g28244 retrotransposon protein, putative, unclassified, expressed FN2753-S Chr1 17905812 G-A 0 0 Single Base Substitution 0 HET FN2753-S Chr1 18241368 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g33136 retrotransposon protein, putative, unclassified, expressed FN2753-S Chr1 19869737 C-T 0 0 Single Base Substitution 0 HET FN2753-S Chr1 22126670 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g39310 SEY1, putative, expressed FN2753-S Chr2 2138606 G-A 0 0 Single Base Substitution 0 HET FN2753-S Chr2 13981702 G-C 0 0 Single Base Substitution 0 HET FN2753-S Chr2 21978201 G-A 0 0 Single Base Substitution 0 Homo FN2753-S Chr2 22166422 C-T 0 0 Single Base Substitution 0 HET FN2753-S Chr2 28020379 A-T 0 0 Single Base Substitution 0 HET FN2753-S Chr3 7682798 A-T 0 0 Single Base Substitution 0 HET FN2753-S Chr3 11016643 G-A 0 0 Single Base Substitution 0 Homo FN2753-S Chr3 19807278 C-T 0 0 Single Base Substitution 0 Homo FN2753-S Chr3 28881227 C-A 0 0 Single Base Substitution 0 HET FN2753-S Chr3 30058467 G-A 0 0 Single Base Substitution 0 HET FN2753-S Chr3 31281611 C-T 0 0 Single Base Substitution 0 HET FN2753-S Chr3 34375481 G-C 0 0 Single Base Substitution 0 HET FN2753-S Chr4 2844729 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g05590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2753-S Chr4 9449393 C-G 0 0 Single Base Substitution 0 HET FN2753-S Chr4 11957221 C-T 0 0 Single Base Substitution 0 HET FN2753-S Chr4 13261573 G-A 0 0 Single Base Substitution 0 Homo FN2753-S Chr4 14794999 T-G 0 0 Single Base Substitution 0 Homo FN2753-S Chr4 18127627 G-A 0 0 Single Base Substitution 0 HET FN2753-S Chr4 18883696 C-A 0 0 Single Base Substitution 0 Homo FN2753-S Chr4 18883697 T-C 0 0 Single Base Substitution 0 Homo FN2753-S Chr4 19214358 T-C 0 0 Single Base Substitution 0 Homo FN2753-S Chr4 21204477 C-A 0 0 Single Base Substitution 0 Homo FN2753-S Chr5 6736152 T-A 0 0 Single Base Substitution 0 Homo FN2753-S Chr5 12140692 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g20710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2753-S Chr5 13966379 A-G 0 0 Single Base Substitution 0 Homo FN2753-S Chr5 22972903 C-T 0 0 Single Base Substitution 0 HET FN2753-S Chr5 26333603 T-C 0 0 Single Base Substitution 0 Homo FN2753-S Chr6 3336626 G-A 0 0 Single Base Substitution 0 Homo FN2753-S Chr6 13295840 T-A 0 0 Single Base Substitution 0 Homo FN2753-S Chr6 26588652 A-G 0 0 Single Base Substitution 0 HET FN2753-S Chr6 29084919 G-A 0 0 Single Base Substitution 0 HET FN2753-S Chr6 29479680 T-C 0 0 Single Base Substitution 0 HET FN2753-S Chr7 8724830 G-A 0 0 Single Base Substitution 0 HET FN2753-S Chr7 14862611 C-T 0 0 Single Base Substitution 0 Homo FN2753-S Chr7 17135547 G-A 0 0 Single Base Substitution 0 HET FN2753-S Chr7 29425169 C-A 0 0 Single Base Substitution 0 HET FN2753-S Chr8 446736 G-A 0 0 Single Base Substitution 0 HET FN2753-S Chr8 3384582 A-G 0 0 Single Base Substitution 0 HET FN2753-S Chr8 7049914 G-A 0 0 Single Base Substitution 0 Homo FN2753-S Chr8 8276829 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g13860 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2753-S Chr8 9151688 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g15100 retrotransposon protein, putative, unclassified, expressed FN2753-S Chr8 13660220 C-T 0 0 Single Base Substitution 0 HET FN2753-S Chr9 19362809 A-G 0 0 Single Base Substitution 0 HET FN2753-S Chr9 19400857 C-T 0 0 Single Base Substitution 0 HET FN2753-S Chr10 2692699 A-G 0 0 Single Base Substitution 0 HET FN2753-S Chr10 6468134 T-A 0 0 Single Base Substitution 0 HET FN2753-S Chr10 6488320 G-A 0 0 Single Base Substitution 0 HET FN2753-S Chr11 3124308 G-T 0 0 Single Base Substitution 0 Homo FN2753-S Chr11 5149599 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g09630 OsFBX407 - F-box domain containing protein, expressed FN2753-S Chr11 18980858 T-A 0 0 Single Base Substitution 0 HET FN2753-S Chr11 22125403 G-T 0 0 Single Base Substitution 0 HET FN2753-S Chr11 25338030 C-T 0 0 Single Base Substitution 0 HET FN2753-S Chr12 8373141 C-G 0 0 Single Base Substitution 0 HET FN2753-S Chr12 9883563 G-A 0 0 Single Base Substitution 0 HET FN2753-S Chr12 11973232 G-T 0 0 Single Base Substitution 0 HET FN2753-S Chr12 13719698 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g24110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2753-S Chr12 20945927 T-A 0 0 Single Base Substitution 0 Homo FN2753-S Chr11 25148081 25148082 0 0 Insertion 1 HET FN2753-S Chr4 14896425 14896426 0 0 Insertion 1 HET FN2753-S Chr1 39835952 39835955 0 0 Deletion 3 Homo FN2753-S Chr1 42653212 42653218 0 0 Deletion 6 Homo FN2753-S Chr4 22303876 22303878 0 0 Deletion 2 Homo FN2753-S Chr6 7240174 7240179 0 0 Deletion 5 Homo FN2753-S Chr6 11485476 11485487 0 0 Deletion 11 Homo FN2753-S Chr8 24724154 24724156 0 0 Deletion 2 HET FN2753-S Chr12 1524590 1524596 0 0 Deletion 6 inframe_deletion Homo LOC_Os12g03750 Leucine Rich Repeat family protein, expressed FN2753-S Chr12 8797140 8797142 0 0 Deletion 2 HET FN2753-S Chr12 20910937 20910938 0 0 Deletion 1 Homo FN2753-S Chr12 27205500 27205505 0 0 Deletion 5 HET FN2753-S Chr5 6411381 6411382 0 0 Deletion 1 HET FN2753-S Chr7 13579697 13579698 0 0 Deletion 1 HET FN2753-S Chr2 18582765 18583272 0 0 Inversion 0 FN2753-S Chr4 19612218 19612385 0 0 Inversion 0 LOC_Os04g32580 expressed protein FN2753-S Chr6 20931162 Chr1 22551268 0 Translocation 0 LOC_Os06g35870 lectin protein kinase family protein, putative, expressed FN2753-S Chr8 12890399 Chr5 26582797 0 Translocation 0 FN2753-S Chr8 12890406 Chr1 20080061 0 Translocation 0 FN2753-S Chr10 8110736 Chr1 16916018 0 Translocation 0 FN2753-S Chr11 22608900 Chr9 11816282 0 Translocation 0 FN2753-S Chr12 15191193 Chr4 18885976 0 Translocation 0 FN2753-S Chr1 12999526 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2753-S Chr1 16657453 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g29730 retrotransposon protein, putative, Ty3-gypsy subclass FN2753-S Chr1 17714943 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr1 37745648 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2753-S Chr2 21073994 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2753-S Chr2 29695555 C-T 0 0 Single Base Substitution 0 INTRON HET FN2753-S Chr2 33047059 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g53970 OsSub24 - Putative Subtilisin homologue, expressed FN2753-S Chr2 33078448 C-G 0 0 Single Base Substitution 0 START_GAINED HET FN2753-S Chr2 33078452 G-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2753-S Chr2 33674453 A-T 0 0 Single Base Substitution 0 INTRON HET FN2753-S Chr3 17224578 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g30180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2753-S Chr3 20500872 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr3 28800928 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr3 29509764 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr3 32175826 G-A 0 0 Single Base Substitution 0 INTRON HET FN2753-S Chr4 10403966 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g18750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2753-S Chr5 9070881 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr5 9070882 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr5 11762075 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr5 23531970 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S Chr5 25534120 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr5 27546792 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr5 28633800 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g49920 pentatricopeptide, putative, expressed FN2753-S Chr6 11963168 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S Chr6 27984388 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr7 399401 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr7 27503070 T-C 0 0 Single Base Substitution 0 INTRON HET FN2753-S Chr8 1157317 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr8 2199926 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr8 12461122 G-A 0 0 Single Base Substitution 0 INTRON HET FN2753-S Chr8 19597116 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr8 20721027 G-A 0 0 Single Base Substitution 0 INTRON HET FN2753-S Chr9 5992744 G-T 0 0 Single Base Substitution 0 INTRON HET FN2753-S Chr9 7499894 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr9 11207196 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr9 12047368 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr9 12306681 G-A 0 0 Single Base Substitution 0 INTRON HET FN2753-S Chr9 20518934 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr9 20825910 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr11 5794257 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr11 8638112 A-C 0 0 Single Base Substitution 0 INTRON HET FN2753-S Chr11 13463650 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN2753-S Chr11 15050766 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr12 5291350 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2753-S Chr12 10670185 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2753-S Chr12 10957923 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr12 11441647 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2753-S Chr12 13064266 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g23100 retrotransposon protein, putative, unclassified, expressed FN2753-S Chr12 19341322 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr12 19343331 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S Chr12 21276986 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2753-S Chr1 3947893 3947893 0 0 Insertion 2 INTERGENIC HET FN2753-S Chr3 35274616 35274616 0 0 Insertion 4 INTERGENIC HET FN2753-S Chr9 13367940 13367940 0 0 Insertion 2 INTERGENIC HET FN2753-S Chr3 5395598 5395598 0 0 Insertion 6 downstream_gene_variant HET FN2753-S Chr3 15266466 15266466 0 0 Insertion 1 downstream_gene_variant HET FN2753-S Chr3 30834296 30834296 0 0 Insertion 6 upstream_gene_variant HET FN2753-S Chr5 2925037 2925037 0 0 Insertion 14 upstream_gene_variant HET FN2753-S Chr5 7022961 7022961 0 0 Insertion 6 intergenic_region HET FN2753-S Chr6 12551051 12551051 0 0 Insertion 1 upstream_gene_variant HET FN2753-S Chr9 4900406 4900406 0 0 Insertion 1 upstream_gene_variant HET FN2753-S Chr11 6900686 6900686 0 0 Insertion 2 downstream_gene_variant HET FN2753-S Chr11 25113040 25113040 0 0 Insertion 14 upstream_gene_variant HET FN2753-S Chr1 27205030 27205033 0 0 Deletion 3 INTERGENIC HOMO FN2753-S Chr2 21926504 21926507 0 0 Deletion 3 INTERGENIC HOMO FN2753-S Chr3 21439707 21439722 0 0 Deletion 15 INTERGENIC HOMO FN2753-S Chr4 3510044 3510045 0 0 Deletion 1 INTERGENIC HOMO FN2753-S Chr4 5349104 5349130 0 0 Deletion 26 INTERGENIC HOMO FN2753-S Chr4 13010166 13010170 0 0 Deletion 4 INTERGENIC HET FN2753-S Chr4 28095714 28095742 0 0 Deletion 28 INTERGENIC HOMO FN2753-S Chr4 30324190 30324202 0 0 Deletion 12 INTERGENIC HOMO FN2753-S Chr5 13541735 13541769 0 0 Deletion 34 INTERGENIC HET FN2753-S Chr7 1915834 1915837 0 0 Deletion 3 INTERGENIC HET FN2753-S Chr7 12767245 12767247 0 0 Deletion 2 INTERGENIC HOMO FN2753-S Chr3 31121859 31121863 0 0 Deletion 4 downstream_gene_variant HET FN2753-S Chr3 36045962 36045964 0 0 Deletion 2 downstream_gene_variant HET FN2753-S Chr4 833506 833507 0 0 Deletion 1 frameshift_variant HET LOC_Os04g02350 transposon protein, putative, unclassified, expressed FN2753-S Chr4 14753982 14753989 0 0 Deletion 7 intron_variant HET FN2753-S Chr5 1327551 1327591 0 0 Deletion 40 upstream_gene_variant HET FN2753-S Chr5 27665648 27665664 0 0 Deletion 16 upstream_gene_variant HET FN2753-S Chr6 10037983 10037987 0 0 Deletion 4 downstream_gene_variant HET FN2753-S Chr6 29334764 29334774 0 0 Deletion 10 upstream_gene_variant HET FN2753-S Chr7 8851707 8851751 0 0 Deletion 44 intron_variant HET FN2753-S Chr7 10968349 10968350 0 0 Deletion 1 upstream_gene_variant HET FN2753-S Chr8 2543625 2543688 0 0 Deletion 63 upstream_gene_variant HET FN2753-S Chr8 21734592 21734594 0 0 Deletion 2 downstream_gene_variant HET FN2753-S Chr9 2225531 2225601 0 0 Deletion 70 upstream_gene_variant HET FN2753-S Chr9 20666289 20666290 0 0 Deletion 1 intergenic_region HET FN2753-S Chr11 18956067 18956068 0 0 Deletion 1 intergenic_region HET FN2753-S Chr12 6826381 6826382 0 0 Deletion 1 upstream_gene_variant HET FN2753-S Chr12 8797140 8797142 0 0 Deletion 2 3_prime_UTR_variant HET FN2753-S Chr8 16556001 16576000 0 0 Deletion 19999 LOC_Os08g27110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2753-S Chr8 16556001 16576000 0 0 Deletion 19999 LOC_Os08g27120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2753-S Chr8 16556001 16576000 0 0 Deletion 19999 LOC_Os08g27130 retrotransposon protein, putative, Ty3-gypsy subclass FN2753-S Chr8 16579001 16611000 0 0 Deletion 31999 LOC_Os08g27140 expressed protein FN2753-S Chr8 16579001 16611000 0 0 Deletion 31999 LOC_Os08g27150 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed FN2753-S Chr8 16579001 16611000 0 0 Deletion 31999 LOC_Os08g27160 expressed protein FN2753-S Chr8 16579001 16611000 0 0 Deletion 31999 LOC_Os08g27170 calmodulin binding protein, putative, expressed FN2753-S Chr8 16579001 16611000 0 0 Deletion 31999 LOC_Os08g27180 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2753-S Chr8 16579001 16611000 0 0 Deletion 31999 LOC_Os08g27190 OsFBX288 - F-box domain containing protein, expressed FN2753-S Chr8 16579001 16611000 0 0 Deletion 31999 LOC_Os08g27590 retrotransposon protein, putative, unclassified, expressed FN2753-S Chr11 11660550 11660943 0 0 Inversion 393 FN2753-S Chr12 1373374 1402214 0 0 Inversion 28840 FN2753-S Chr12 1373378 1402219 0 0 Inversion 28841 FN2753-S Chr5 26005965 Chr1 33854332 0 Translocation 0 LOC_Os05g44730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2753-S Chr8 19371940 Chr7 20951359 0 Translocation 0 LOC_Os08g31320 expressed protein FN2753-S Chr8 19372459 Chr7 20951362 0 Translocation 0 FN2753-S Chr8 20584384 Chr6 1072417 0 Translocation 0 FN2753-S Chr9 21260004 Chr8 24138969 0 Translocation 0 FN2753-S Chr11 5733929 Chr1 10234167 0 Translocation 0 FN2753-S Chr11 10659256 Chr6 15618050 0 Translocation 0 FN2753-S Chr11 27758202 Chr4 3130962 0 Translocation 0 FN2753-S Chr12 3766431 Chr11 17795284 0 Translocation 0 FN2753-S Chr12 4788930 Chr3 16568136 0 Translocation 0 FN2753-S Chr12 13923178 Chr2 19373260 0 Translocation 0 FN2753-S Chr5 26005965 Chr1 33854332 0 Translocation 0 LOC_Os01g58570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2753-S Chr12 8582249 Chr1 19169551 0 Translocation 0 LOC_Os01g34760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2753-S Chr12 14379827 Chr11 11845209 0 Translocation 0 LOC_Os11g20460 retrotransposon protein, putative, unclassified, expressed