FN3187-S Chr1 23058 T-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3187-S Chr1 9643079 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3187-S Chr1 22134014 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3187-S Chr1 27961262 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g48750 aspartic proteinase nepenthesin-2 precursor, putative, expressed FN3187-S Chr1 27961263 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g48750 aspartic proteinase nepenthesin-2 precursor, putative, expressed FN3187-S Chr1 28699659 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3187-S Chr2 8559711 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3187-S Chr2 10785715 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3187-S Chr2 19912155 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3187-S Chr2 23796244 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3187-S Chr2 35438851 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g57880 expressed protein FN3187-S Chr3 17620805 T-A 0 0 Single Base Substitution 0 INTRON HET FN3187-S Chr4 12783205 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3187-S Chr4 13563235 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3187-S Chr4 13888214 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3187-S Chr4 28615888 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3187-S Chr5 8540888 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3187-S Chr5 20860796 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3187-S Chr6 145595 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3187-S Chr7 14053252 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g24700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3187-S Chr7 26941597 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3187-S Chr8 9551610 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g15750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3187-S Chr8 13295803 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3187-S Chr8 13520624 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3187-S Chr8 13520635 T-G 0 0 Single Base Substitution 0 INTRON HOMO FN3187-S Chr8 26793736 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g42440 CCT/B-box zinc finger protein, putative, expressed FN3187-S Chr9 9717176 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3187-S Chr9 10254514 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g16760 ankyrin repeat family protein, putative, expressed FN3187-S Chr10 7510941 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3187-S Chr11 2523890 G-A 0 0 Single Base Substitution 0 INTRON HET FN3187-S Chr11 16633409 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3187-S Chr12 3043965 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3187-S Chr12 9716780 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3187-S Chr12 20359181 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3187-S Chr12 24620405 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3187-S Chr1 6457050 6457050 0 0 Insertion 1 INTERGENIC HET FN3187-S Chr3 2973611 2973611 0 0 Insertion 2 INTRON HET FN3187-S Chr4 34504049 34504049 0 0 Insertion 4 INTERGENIC HET FN3187-S Chr5 24996525 24996525 0 0 Insertion 2 INTERGENIC HET FN3187-S Chr10 348650 348650 0 0 Insertion 4 INTERGENIC HET FN3187-S Chr10 1348993 1348993 0 0 Insertion 2 FRAME_SHIFT HET LOC_Os10g03190 retrotransposon protein, putative, unclassified FN3187-S Chr1 14454752 14454752 0 0 Insertion 1 downstream_gene_variant HET FN3187-S Chr2 33057036 33057036 0 0 Insertion 3 intron_variant HET FN3187-S Chr6 8656151 8656151 0 0 Insertion 6 downstream_gene_variant HET FN3187-S Chr7 26781253 26781253 0 0 Insertion 1 3_prime_UTR_variant HET FN3187-S Chr8 18912894 18912894 0 0 Insertion 26 downstream_gene_variant HET FN3187-S Chr11 22782088 22782088 0 0 Insertion 32 upstream_gene_variant HET FN3187-S Chr12 13553852 13553852 0 0 Insertion 44 upstream_gene_variant HET FN3187-S Chr1 5746642 5746643 0 0 Deletion 1 INTERGENIC HET FN3187-S Chr2 2350987 2350994 0 0 Deletion 7 INTERGENIC HET FN3187-S Chr3 2278858 2278859 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os03g04790 retrotransposon protein, putative, unclassified, expressed FN3187-S Chr3 32553474 32553479 0 0 Deletion 5 FRAME_SHIFT HET LOC_Os03g57090 arv1, putative, expressed FN3187-S Chr6 6897100 6897111 0 0 Deletion 11 INTRON HOMO FN3187-S Chr7 27720139 27720140 0 0 Deletion 1 SPLICE_SITE_REGION HET FN3187-S Chr10 20702691 20702715 0 0 Deletion 24 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os10g38870 heavy metal-associated domain containing protein, expressed FN3187-S Chr12 2422567 2422571 0 0 Deletion 4 INTERGENIC HET FN3187-S Chr12 26772071 26772078 0 0 Deletion 7 INTRON HET FN3187-S Chr2 10132676 10132688 0 0 Deletion 12 downstream_gene_variant HET FN3187-S Chr3 7382757 7382758 0 0 Deletion 1 downstream_gene_variant HET FN3187-S Chr6 21518860 21518861 0 0 Deletion 1 upstream_gene_variant HET FN3187-S Chr10 1802770 1802771 0 0 Deletion 1 upstream_gene_variant HET FN3187-S Chr12 4137070 4137154 0 0 Deletion 84 upstream_gene_variant HET FN3187-S Chr12 9181418 9181434 0 0 Deletion 16 intron_variant HET FN3187-S Chr2 17930001 17982000 0 0 Deletion 51999 LOC_Os02g30190 expressed protein FN3187-S Chr2 17930001 17982000 0 0 Deletion 51999 LOC_Os02g30200 PE-PGRS family protein, putative, expressed FN3187-S Chr2 17930001 17982000 0 0 Deletion 51999 LOC_Os02g30210 OsFBK7 - F-box domain and kelch repeat containing protein, expressed FN3187-S Chr2 17930001 17982000 0 0 Deletion 51999 LOC_Os02g30219 expressed protein FN3187-S Chr2 17930001 17982000 0 0 Deletion 51999 LOC_Os02g30230 exo70 exocyst complex subunit domain containing protein, expressed FN3187-S Chr2 17930001 17982000 0 0 Deletion 51999 LOC_Os02g30240 expressed protein FN3187-S Chr2 17930001 17982000 0 0 Deletion 51999 LOC_Os02g32700 autophagy-related protein, putative, expressed FN3187-S Chr7 265001 281000 0 0 Deletion 15999 LOC_Os07g01430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3187-S Chr7 265001 281000 0 0 Deletion 15999 LOC_Os07g01940 sister chromatid cohesion 2, putative, expressed FN3187-S Chr7 7378001 7458000 0 0 Deletion 79999 LOC_Os07g12890 metal cation transporter, putative, expressed FN3187-S Chr7 7378001 7458000 0 0 Deletion 79999 LOC_Os07g12900 cadmium/zinc-transporting ATPase, putative, expressed FN3187-S Chr7 7378001 7458000 0 0 Deletion 79999 LOC_Os07g12910 PHD finger protein, putative, expressed FN3187-S Chr7 7378001 7458000 0 0 Deletion 79999 LOC_Os07g12920 expressed protein FN3187-S Chr7 7378001 7458000 0 0 Deletion 79999 LOC_Os07g12940 expressed protein FN3187-S Chr7 7378001 7458000 0 0 Deletion 79999 LOC_Os07g12950 transposon protein, putative, unclassified, expressed FN3187-S Chr7 7378001 7458000 0 0 Deletion 79999 LOC_Os07g12970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3187-S Chr7 7378001 7458000 0 0 Deletion 79999 LOC_Os07g12980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3187-S Chr7 7378001 7458000 0 0 Deletion 79999 LOC_Os07g12990 conserved hypothetical protein FN3187-S Chr7 7378001 7458000 0 0 Deletion 79999 LOC_Os07g13010 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13020 SWIM zinc finger family protein, putative FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13030 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13040 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13050 hypothetical protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13070 transposon protein, putative, CACTA, En/Spm sub-class FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13090 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13100 DNA binding protein, putative, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13140 retrotransposon protein, putative, unclassified, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13160 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13170 AP2 domain containing protein, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13180 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13190 retrotransposon protein, putative, unclassified, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13200 retrotransposon protein, putative, unclassified, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13210 retrotransposon protein, putative, unclassified, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13220 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13230 eukaryotic initiation factor 5A hypusine, DNA-binding OB fold family protein, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13234 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13240 hypothetical protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13260 dof zinc finger domain containing protein, putative, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13270 SNF7 domain containing protein, putative, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13280 RNA recognition motif containing protein, putative, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13310 RALFL10 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13319 hypothetical protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13330 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13340 retrotransposon protein, putative, unclassified, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13350 retrotransposon protein, putative, unclassified, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13360 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13370 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13380 RALFL11 - Rapid ALkalinization Factor RALF family protein precursor, putative FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13390 transposon protein, putative, unclassified, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13420 retrotransposon protein, putative, Ty3-gypsy subclass FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13440 RALFL12 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13450 RALFL13 - Rapid ALkalinization Factor RALF family protein precursor, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13460 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13480 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13490 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13500 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13510 retrotransposon, putative, centromere-specific, expressed FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g13520 expressed protein FN3187-S Chr7 7462001 7740000 0 0 Deletion 277999 LOC_Os07g15959 expressed protein FN3187-S Chr8 13283278 13544382 0 0 Inversion 261104 FN3187-S Chr8 13290077 13523924 0 0 Inversion 233847 FN3187-S Chr8 13523915 13666611 0 0 Inversion 142696 FN3187-S Chr8 13544391 13666680 0 0 Inversion 122289 FN3187-S Chr12 11756334 12466511 0 0 Inversion 710177 LOC_Os12g20169 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3187-S Chr12 11756347 12466520 0 0 Inversion 710173 LOC_Os12g20169 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3187-S Chr9 7742322 Chr1 22939869 0 Translocation 0 FN3187-S Chr11 18508356 Chr1 40950870 0 Translocation 0 FN3187-S Chr4 27176931 Chr3 4142104 0 Translocation 0 LOC_Os03g08110 hydrolase protein, putative, expressed