FN3243-S Chr1 4160156 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr1 4276503 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr1 4276504 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr1 41867951 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g72205 proline synthetase co-transcribed bacterial homolog protein, putative, expressed FN3243-S Chr1 42721542 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g73750 Leucine Rich Repeat family protein, expressed FN3243-S Chr2 24881914 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr3 1305381 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr3 12791573 T-C 0 0 Single Base Substitution 0 INTRON HET FN3243-S Chr3 20579396 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr3 35737691 G-T 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN3243-S Chr4 10648883 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3243-S Chr4 19709860 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g32690 expressed protein FN3243-S Chr4 19709861 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g32690 expressed protein FN3243-S Chr5 8635485 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3243-S Chr5 18622169 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3243-S Chr5 20959559 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr5 22104976 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g37760 retrotransposon protein, putative, unclassified, expressed FN3243-S Chr6 1879603 T-C 0 0 Single Base Substitution 0 INTRON HET FN3243-S Chr6 6022986 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr6 20250274 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3243-S Chr7 21303461 C-T 0 0 Single Base Substitution 0 INTRON HET FN3243-S Chr7 25401629 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr7 25524878 G-T 0 0 Single Base Substitution 0 START_GAINED HET FN3243-S Chr8 3926933 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr8 12112316 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr8 22344046 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr9 19797669 C-T 0 0 Single Base Substitution 0 INTRON HET FN3243-S Chr10 19721820 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr10 20167057 G-T 0 0 Single Base Substitution 0 INTRON HET FN3243-S Chr11 3289392 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr11 4739444 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3243-S Chr11 16471874 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr11 21987460 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g37210 MTN26L5 - MtN26 family protein precursor, expressed FN3243-S Chr12 2157812 G-A 0 0 Single Base Substitution 0 INTRON HET FN3243-S Chr12 6952552 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3243-S Chr12 13318326 C-T 0 0 Single Base Substitution 0 INTRON HET FN3243-S Chr12 16938955 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3243-S Chr12 19117635 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3243-S Chr12 19117638 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3243-S Chr12 19117642 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3243-S Chr3 14715479 14715479 0 0 Insertion 2 INTERGENIC HOMO FN3243-S Chr1 5943191 5943191 0 0 Insertion 12 upstream_gene_variant HET FN3243-S Chr1 10106552 10106552 0 0 Insertion 12 upstream_gene_variant HET FN3243-S Chr5 5186583 5186583 0 0 Insertion 21 downstream_gene_variant HET FN3243-S Chr5 17220259 17220259 0 0 Insertion 55 upstream_gene_variant HET FN3243-S Chr5 28410554 28410554 0 0 Insertion 6 intron_variant HET FN3243-S Chr6 10456360 10456360 0 0 Insertion 43 upstream_gene_variant HET FN3243-S Chr7 1308320 1308320 0 0 Insertion 6 upstream_gene_variant HET FN3243-S Chr7 24240077 24240077 0 0 Insertion 31 upstream_gene_variant HET FN3243-S Chr11 26391390 26391390 0 0 Insertion 89 downstream_gene_variant HET FN3243-S Chr11 28746600 28746600 0 0 Insertion 1 upstream_gene_variant HET FN3243-S Chr12 21737606 21737606 0 0 Insertion 52 downstream_gene_variant HET FN3243-S Chr2 12404894 12404895 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os02g20970 C2 domain containing protein, putative, expressed FN3243-S Chr2 21459149 21459150 0 0 Deletion 1 INTERGENIC HOMO FN3243-S Chr2 34039814 34039816 0 0 Deletion 2 INTERGENIC HET FN3243-S Chr3 17851451 17851452 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os03g31320 RING zinc finger protein-like, putative, expressed FN3243-S Chr4 9420650 9420662 0 0 Deletion 12 INTERGENIC HOMO FN3243-S Chr4 33408029 33408046 0 0 Deletion 17 FRAME_SHIFT HOMO LOC_Os04g56090 S-locus-like receptor protein kinase, putative, expressed FN3243-S Chr5 5504336 5504339 0 0 Deletion 3 INTRON HET FN3243-S Chr5 16343721 16343747 0 0 Deletion 26 INTERGENIC HET FN3243-S Chr5 18284474 18284479 0 0 Deletion 5 FRAME_SHIFT HOMO LOC_Os05g31440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3243-S Chr6 28193488 28193489 0 0 Deletion 1 INTRON HET FN3243-S Chr7 3411011 3411016 0 0 Deletion 5 INTERGENIC HOMO FN3243-S Chr8 18469492 18469505 0 0 Deletion 13 INTRON HET FN3243-S Chr8 21109551 21109553 0 0 Deletion 2 INTERGENIC HET FN3243-S Chr11 716390 716398 0 0 Deletion 8 UTR_3_PRIME HET FN3243-S Chr11 17306095 17306097 0 0 Deletion 2 INTERGENIC HET FN3243-S Chr11 27312050 27312053 0 0 Deletion 3 INTERGENIC HET FN3243-S Chr12 11917764 11917782 0 0 Deletion 18 INTRON HOMO FN3243-S Chr12 22226752 22226753 0 0 Deletion 1 INTERGENIC HOMO FN3243-S Chr1 14028969 14028970 0 0 Deletion 1 upstream_gene_variant HET FN3243-S Chr1 36027282 36027292 0 0 Deletion 10 upstream_gene_variant HET FN3243-S Chr4 16408632 16408693 0 0 Deletion 61 splice_region_variant&intron_variant HET FN3243-S Chr4 31708736 31708737 0 0 Deletion 1 intergenic_region HET FN3243-S Chr8 1594378 1594379 0 0 Deletion 1 upstream_gene_variant HET FN3243-S Chr8 16384425 16384481 0 0 Deletion 56 downstream_gene_variant HET FN3243-S Chr9 13105235 13105236 0 0 Deletion 1 frameshift_variant HET LOC_Os09g21640 retrotransposon protein, putative, Ty3-gypsy subclass FN3243-S Chr9 21123410 21123460 0 0 Deletion 50 downstream_gene_variant HET FN3243-S Chr10 15179717 15179743 0 0 Deletion 26 upstream_gene_variant HET FN3243-S Chr11 1575536 1575537 0 0 Deletion 1 intron_variant HET FN3243-S Chr11 27676960 27676986 0 0 Deletion 26 upstream_gene_variant HET FN3243-S Chr1 16093001 16157000 0 0 Deletion 63999 LOC_Os01g28744 retrotransposon protein, putative, unclassified, expressed FN3243-S Chr1 16093001 16157000 0 0 Deletion 63999 LOC_Os01g28750 retrotransposon, putative, centromere-specific FN3243-S Chr1 16093001 16157000 0 0 Deletion 63999 LOC_Os01g28760 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3243-S Chr1 16093001 16157000 0 0 Deletion 63999 LOC_Os01g28770 hypothetical protein FN3243-S Chr1 16093001 16157000 0 0 Deletion 63999 LOC_Os01g28780 hypothetical protein FN3243-S Chr1 16093001 16157000 0 0 Deletion 63999 LOC_Os01g28790 PRAS-rich protein, putative, expressed FN3243-S Chr1 16093001 16157000 0 0 Deletion 63999 LOC_Os01g28800 retrotransposon protein, putative, unclassified FN3243-S Chr1 16093001 16157000 0 0 Deletion 63999 LOC_Os01g28810 expressed protein FN3243-S Chr1 16093001 16157000 0 0 Deletion 63999 LOC_Os01g28820 retrotransposon, putative, centromere-specific, expressed FN3243-S Chr1 16093001 16157000 0 0 Deletion 63999 LOC_Os01g28830 expressed protein FN3243-S Chr1 16093001 16157000 0 0 Deletion 63999 LOC_Os01g28840 C4-dicarboxylate transporter/malic acid transport protein, expressed FN3243-S Chr1 16093001 16157000 0 0 Deletion 63999 LOC_Os01g28850 expressed protein FN3243-S Chr1 16093001 16157000 0 0 Deletion 63999 LOC_Os01g29020 retrotransposon, putative, centromere-specific, expressed FN3243-S Chr1 16244001 16253000 0 0 Deletion 8999 LOC_Os01g29050 retrotransposon protein, putative, unclassified, expressed FN3243-S Chr1 16261001 16269000 0 0 Deletion 7999 LOC_Os01g29060 transposon protein, putative, unclassified FN3243-S Chr1 16261001 16269000 0 0 Deletion 7999 LOC_Os01g29080 retrotransposon protein, putative, unclassified, expressed FN3243-S Chr1 16279001 16293000 0 0 Deletion 13999 LOC_Os01g29090 retrotransposon protein, putative, unclassified FN3243-S Chr1 16279001 16293000 0 0 Deletion 13999 LOC_Os01g29100 retrotransposon protein, putative, unclassified, expressed FN3243-S Chr1 16279001 16293000 0 0 Deletion 13999 LOC_Os01g52640 suppressor of phythchrome A, putative, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g28860 MBTB39 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g28870 MBTB40 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g28890 retrotransposon protein, putative, unclassified, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g28900 retrotransposon protein, putative, Ty3-gypsy subclass FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g28910 retrotransposon protein, putative, unclassified FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g28914 expressed protein FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g28920 retrotransposon protein, putative, Ty3-gypsy subclass FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g28930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g28950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g28960 expressed protein FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g28970 BTB6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g28975 BTB/POZ domain containing protein, putative, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g28990 MBTB42 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29000 transposon protein, putative, CACTA, En/Spm sub-class FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29020 ATBPM2, putative, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29040 expressed protein FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29050 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29060 BTB7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29070 transposon protein, putative, unclassified, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29090 retrotransposon protein, putative, unclassified, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29100 MBTB44 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29110 MBTB45 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29120 speckle-type POZ protein, putative, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29130 conserved hypothetical protein FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29150 MBTB46 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29159 expressed protein FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29170 transposon protein, putative, Ac/Ds sub-class, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29180 MBTB47 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29190 BTB/POZ domain containing protein, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29210 retrotransposon protein, putative, unclassified, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29220 MBTB48 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29230 MBTB49 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29240 expressed protein FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29250 hypothetical protein FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29260 speckle-type POZ protein, putative, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29274 Leucine rich repeat N-terminal domain containing protein, putative, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29290 MBTB50 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29300 expressed protein FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29310 MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29320 speckle-type POZ protein, putative, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29330 speckle-type POZ protein B, putative, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29340 speckle-type POZ protein-like, putative, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29350 hypothetical protein FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29360 BTB/POZ domain containing protein, putative, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29370 snRNP protein, putative, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29380 MBTB52 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29390 expressed protein FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29410 MBTB53 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29420 retrotransposon protein, putative, unclassified, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29430 RNA-directed DNA polymerase, putative, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29440 speckle-type POZ protein, putative, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29450 expressed protein FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29460 expressed protein FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g29470 dehydrogenase, putative, expressed FN3243-S Chr10 15037001 15313000 0 0 Deletion 275999 LOC_Os10g35190 ZOS10-06 - C2H2 zinc finger protein, expressed FN3243-S Chr1 3079308 3174698 0 0 Inversion 95390 FN3243-S Chr1 16062208 16156957 0 0 Inversion 94749 LOC_Os01g28690 nucleoporin autopeptidase domain containing protein, expressed FN3243-S Chr1 16062209 16244372 0 0 Inversion 182163 LOC_Os01g28690 nucleoporin autopeptidase domain containing protein, expressed FN3243-S Chr1 16156983 16292147 0 0 Inversion 135164 LOC_Os01g28850 expressed protein FN3243-S Chr4 11474272 11474560 0 0 Inversion 288 FN3243-S Chr10 15297278 Chr4 4108314 0 Translocation 0 FN3243-S Chr10 18634800 Chr8 27836248 0 Translocation 0 FN3243-S Chr11 27253533 Chr7 22208108 0 Translocation 0 FN3243-S Chr6 8867765 Chr1 16062213 0 Translocation 0 LOC_Os01g28690 nucleoporin autopeptidase domain containing protein, expressed