FN3269-S Chr1 19636654 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3269-S Chr1 39221861 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr2 33752586 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g55110 expressed protein FN3269-S Chr3 24211145 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr4 1663557 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr4 2623977 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3269-S Chr4 5500839 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr4 8131993 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g14520 retrotransposon protein, putative, unclassified, expressed FN3269-S Chr4 17597352 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr4 29884868 A-G 0 0 Single Base Substitution 0 START_GAINED HOMO FN3269-S Chr5 1605154 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3269-S Chr5 1605156 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g03690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3269-S Chr5 8152718 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr5 8799450 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g15550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3269-S Chr6 6969837 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr6 26068223 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3269-S Chr7 6801187 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3269-S Chr8 478398 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g01794 bromodomain domain containing protein, expressed FN3269-S Chr8 1581310 G-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3269-S Chr8 1581312 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3269-S Chr8 10878261 T-C 0 0 Single Base Substitution 0 INTRON HET FN3269-S Chr8 12822436 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g21520 retrotransposon protein, putative, unclassified FN3269-S Chr8 15479022 A-T 0 0 Single Base Substitution 0 SPLICE_SITE_ACCEPTOR HET LOC_Os08g25430 cysteine-rich receptor-like protein kinase 35 precursor, putative, expressed FN3269-S Chr9 13660829 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr9 17959141 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr10 3170971 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN3269-S Chr10 20701862 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr11 9620207 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr11 10201811 C-T 0 0 Single Base Substitution 0 INTRON HET FN3269-S Chr11 10201812 A-T 0 0 Single Base Substitution 0 INTRON HET FN3269-S Chr11 14900939 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr11 16467653 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr11 25157396 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr11 26386269 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr12 5524829 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3269-S Chr12 21507933 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g35370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3269-S Chr5 25089464 25089464 0 0 Insertion 10 intergenic_region HET FN3269-S Chr7 24240105 24240105 0 0 Insertion 79 upstream_gene_variant HET FN3269-S Chr1 7093071 7093076 0 0 Deletion 5 FRAME_SHIFT HET LOC_Os01g12810 retrotransposon protein, putative, unclassified, expressed FN3269-S Chr1 31639651 31639677 0 0 Deletion 26 INTRON HET FN3269-S Chr1 43187790 43187800 0 0 Deletion 10 INTERGENIC HET FN3269-S Chr2 25334190 25334202 0 0 Deletion 12 INTRON HOMO FN3269-S Chr3 13047180 13047185 0 0 Deletion 5 INTERGENIC HOMO FN3269-S Chr3 13064040 13064044 0 0 Deletion 4 FRAME_SHIFT HOMO LOC_Os03g22634 terpene synthase, putative, expressed FN3269-S Chr3 13655699 13655700 0 0 Deletion 1 INTERGENIC HET FN3269-S Chr3 24765332 24765334 0 0 Deletion 2 INTERGENIC HOMO FN3269-S Chr4 5039234 5039236 0 0 Deletion 2 INTERGENIC HET FN3269-S Chr4 19544456 19544464 0 0 Deletion 8 INTERGENIC HET FN3269-S Chr4 21734441 21734446 0 0 Deletion 5 FRAME_SHIFT HOMO LOC_Os04g35660 no apical meristem protein, putative, expressed FN3269-S Chr6 24242466 24242472 0 0 Deletion 6 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os06g40660 retrotransposon protein, putative, unclassified FN3269-S Chr6 25231425 25231426 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os06g42020 CSLA9 - cellulose synthase-like family A, expressed FN3269-S Chr7 9766977 9766982 0 0 Deletion 5 INTERGENIC HET FN3269-S Chr7 10446430 10446431 0 0 Deletion 1 INTERGENIC HOMO FN3269-S Chr7 13523651 13523653 0 0 Deletion 2 INTERGENIC HET FN3269-S Chr7 25780636 25780644 0 0 Deletion 8 INTRON HOMO FN3269-S Chr8 1777864 1777865 0 0 Deletion 1 INTERGENIC HET FN3269-S Chr8 3911768 3911773 0 0 Deletion 5 INTERGENIC HET FN3269-S Chr8 25691846 25691855 0 0 Deletion 9 INTERGENIC HET FN3269-S Chr9 828940 828944 0 0 Deletion 4 INTERGENIC HOMO FN3269-S Chr9 2687807 2687809 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os09g04990 cytoskeletal protein, putative, expressed FN3269-S Chr9 6891538 6891547 0 0 Deletion 9 INTRON HOMO FN3269-S Chr10 22025980 22025989 0 0 Deletion 9 INTRON HET FN3269-S Chr12 14018603 14018614 0 0 Deletion 11 FRAME_SHIFT HOMO LOC_Os12g24540 PHD-finger family protein, expressed FN3269-S Chr3 31579868 31579870 0 0 Deletion 2 intergenic_region HET FN3269-S Chr6 11800947 11800952 0 0 Deletion 5 downstream_gene_variant HET FN3269-S Chr8 22593874 22593907 0 0 Deletion 33 downstream_gene_variant HET FN3269-S Chr11 5969001 5980000 0 0 Deletion 10999 LOC_Os11g10830 retrotransposon protein, putative, unclassified, expressed FN3269-S Chr11 5969001 5980000 0 0 Deletion 10999 LOC_Os11g10840 expressed protein FN3269-S Chr11 5969001 5980000 0 0 Deletion 10999 LOC_Os11g10850 dirigent, putative, expressed FN3269-S Chr11 5969001 5980000 0 0 Deletion 10999 LOC_Os11g18940 WW domain containing protein, expressed FN3269-S Chr11 5966126 5969437 0 0 Inversion 3311 LOC_Os11g10820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3269-S Chr11 9840757 9912542 0 0 Inversion 71785 FN3269-S Chr11 9912528 10442374 0 0 Inversion 529846 FN3269-S Chr11 10201001 10219655 0 0 Inversion 18654 FN3269-S Chr11 10219662 10442830 0 0 Inversion 223168 FN3269-S Chr3 1302556 Chr2 15512942 0 Translocation 0 FN3269-S Chr6 24570067 Chr2 18235196 0 Translocation 0 FN3269-S Chr9 15256577 Chr8 12780720 0 Translocation 0 FN3269-S Chr10 6817373 Chr6 18374054 0 Translocation 0 LOC_Os10g12240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3269-S Chr11 6602817 Chr2 4170016 0 Translocation 0 FN3269-S Chr11 10201011 Chr5 22349550 0 Translocation 0 FN3269-S Chr11 10201166 Chr5 22349551 0 Translocation 0 FN3269-S Chr11 11900466 Chr9 13703331 0 Translocation 0 FN3269-S Chr12 9418700 Chr1 818514 0 Translocation 0 FN3269-S Chr10 6817373 Chr6 18374054 0 Translocation 0 LOC_Os06g31600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3269-S Chr11 10874570 Chr2 5944591 0 Translocation 0 LOC_Os02g11090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed