FN3426-S Chr1 11769260 G-C 0 0 Single Base Substitution 0 HET FN3426-S Chr1 12942681 A-G 0 0 Single Base Substitution 0 HET FN3426-S Chr1 13747342 A-G 0 0 Single Base Substitution 0 STOP_LOST HET LOC_Os01g24390 retrotransposon protein, putative, unclassified, expressed FN3426-S Chr1 16706101 A-G 0 0 Single Base Substitution 0 HET FN3426-S Chr1 16778591 C-T 0 0 Single Base Substitution 0 HET FN3426-S Chr1 28751326 C-T 0 0 Single Base Substitution 0 HET FN3426-S Chr2 15648141 G-A 0 0 Single Base Substitution 0 Homo FN3426-S Chr2 23205859 C-T 0 0 Single Base Substitution 0 HET FN3426-S Chr2 27899851 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g45800 retrotransposon protein, putative, unclassified, expressed FN3426-S Chr2 31303276 G-A 0 0 Single Base Substitution 0 HET FN3426-S Chr3 7861347 C-G 0 0 Single Base Substitution 0 HET FN3426-S Chr3 30143063 A-G 0 0 Single Base Substitution 0 Homo FN3426-S Chr3 31265836 G-C 0 0 Single Base Substitution 0 HET FN3426-S Chr4 6114315 T-C 0 0 Single Base Substitution 0 Homo FN3426-S Chr4 12856187 G-A 0 0 Single Base Substitution 0 Homo FN3426-S Chr4 14908499 A-T 0 0 Single Base Substitution 0 Homo FN3426-S Chr4 23381239 G-A 0 0 Single Base Substitution 0 Homo FN3426-S Chr5 5154448 C-A 0 0 Single Base Substitution 0 HET FN3426-S Chr5 13432304 G-A 0 0 Single Base Substitution 0 HET FN3426-S Chr5 13867050 C-T 0 0 Single Base Substitution 0 Homo FN3426-S Chr6 7001240 C-T 0 0 Single Base Substitution 0 HET FN3426-S Chr6 12012122 C-A 0 0 Single Base Substitution 0 HET FN3426-S Chr6 13196751 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g22690 bundle sheath defective protein 2, putative, expressed FN3426-S Chr6 14971396 T-A 0 0 Single Base Substitution 0 HET FN3426-S Chr6 15160345 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os06g25910 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3426-S Chr6 26945341 C-T 0 0 Single Base Substitution 0 HET FN3426-S Chr7 5175005 G-A 0 0 Single Base Substitution 0 HET FN3426-S Chr7 5959740 C-G 0 0 Single Base Substitution 0 HET FN3426-S Chr7 9996681 C-T 0 0 Single Base Substitution 0 HET FN3426-S Chr7 23960585 T-A 0 0 Single Base Substitution 0 HET FN3426-S Chr8 1147356 G-A 0 0 Single Base Substitution 0 HET FN3426-S Chr8 7170581 C-T 0 0 Single Base Substitution 0 HET FN3426-S Chr8 9601011 G-A 0 0 Single Base Substitution 0 Homo FN3426-S Chr8 11002016 G-A 0 0 Single Base Substitution 0 Homo FN3426-S Chr8 17041758 G-A 0 0 Single Base Substitution 0 Homo FN3426-S Chr8 17598255 G-A 0 0 Single Base Substitution 0 Homo FN3426-S Chr8 21203175 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g33870 retrotransposon protein, putative, unclassified, expressed FN3426-S Chr8 21757101 G-A 0 0 Single Base Substitution 0 HET FN3426-S Chr8 25480274 A-G 0 0 Single Base Substitution 0 Homo FN3426-S Chr8 26491491 T-A 0 0 Single Base Substitution 0 HET FN3426-S Chr9 15574360 C-T 0 0 Single Base Substitution 0 HET FN3426-S Chr10 7534783 T-A 0 0 Single Base Substitution 0 HET FN3426-S Chr12 2978397 T-G 0 0 Single Base Substitution 0 Homo FN3426-S Chr12 3222682 A-C 0 0 Single Base Substitution 0 Homo FN3426-S Chr12 12932499 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g22900 transposon protein, putative, CACTA, En/Spm sub-class FN3426-S Chr12 14688152 C-T 0 0 Single Base Substitution 0 HET FN3426-S Chr2 33351082 33351084 0 0 Insertion 2 HET FN3426-S Chr7 12286567 12286570 0 0 Insertion 3 HET FN3426-S Chr1 41615973 41615974 0 0 Insertion 1 HET FN3426-S Chr3 18407679 18407682 0 0 Insertion 3 HET FN3426-S Chr4 16813497 16813568 0 0 Insertion 71 HET FN3426-S Chr7 17322360 17322361 0 0 Insertion 1 HET FN3426-S Chr9 16204141 16204143 0 0 Insertion 2 HET FN3426-S Chr12 21861348 21861352 0 0 Insertion 4 frameshift_variant HET LOC_Os12g35880 retrotransposon protein, putative, unclassified, expressed FN3426-S Chr1 29239624 29239632 0 0 Deletion 8 Homo FN3426-S Chr2 34833925 34833934 0 0 Deletion 9 Homo FN3426-S Chr5 9390192 9390198 0 0 Deletion 6 HET FN3426-S Chr5 11256170 11256173 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os05g19380 pentatricopeptide, putative, expressed FN3426-S Chr5 11307187 11307196 0 0 Deletion 9 disruptive_inframe_deletion HET LOC_Os05g19460 retrotransposon protein, putative, unclassified, expressed FN3426-S Chr5 17228032 17228040 0 0 Deletion 8 Homo FN3426-S Chr6 6817343 6817350 0 0 Deletion 7 Homo FN3426-S Chr7 28133199 28133203 0 0 Deletion 4 HET FN3426-S Chr11 1365921 1365924 0 0 Deletion 3 Homo FN3426-S Chr11 19213912 19213913 0 0 Deletion 1 Homo FN3426-S Chr12 4720006 4720007 0 0 Deletion 1 Homo FN3426-S Chr12 16466454 16466458 0 0 Deletion 4 Homo FN3426-S Chr4 2872949 2873059 0 0 Deletion 110 HET FN3426-S Chr11 25055441 25056039 0 0 Deletion 598 HET FN3426-S Chr6 23617001 23629000 0 0 Deletion 11999 LOC_Os06g39760 WD domain, G-beta repeat domain containing protein, expressed FN3426-S Chr6 23617001 23629000 0 0 Deletion 11999 LOC_Os06g39770 retrotransposon protein, putative, unclassified, expressed FN3426-S Chr8 15790001 15859000 0 0 Deletion 68999 LOC_Os08g25960 transposon protein, putative, unclassified, expressed FN3426-S Chr8 15790001 15859000 0 0 Deletion 68999 LOC_Os08g25970 retrotransposon protein, putative, unclassified, expressed FN3426-S Chr8 15790001 15859000 0 0 Deletion 68999 LOC_Os08g25980 retrotransposon protein, putative, unclassified, expressed FN3426-S Chr8 15790001 15859000 0 0 Deletion 68999 LOC_Os08g25990 alcohol oxidase-related, putative, expressed FN3426-S Chr8 15790001 15859000 0 0 Deletion 68999 LOC_Os08g26010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3426-S Chr8 15790001 15859000 0 0 Deletion 68999 LOC_Os08g26020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3426-S Chr8 15790001 15859000 0 0 Deletion 68999 LOC_Os08g26030 expressed protein FN3426-S Chr8 15790001 15859000 0 0 Deletion 68999 LOC_Os08g26040 expressed protein FN3426-S Chr8 15790001 15859000 0 0 Deletion 68999 LOC_Os08g26050 hypothetical protein FN3426-S Chr8 15790001 15859000 0 0 Deletion 68999 LOC_Os08g26060 expressed protein FN3426-S Chr4 6345957 7191077 0 0 Inversion 0 LOC_Os04g11580 transposon protein, putative, CACTA, En/Spm sub-class FN3426-S Chr4 6345962 7191077 0 0 Inversion 0 LOC_Os04g11580 transposon protein, putative, CACTA, En/Spm sub-class FN3426-S Chr4 9308631 9308889 0 0 Inversion 0 LOC_Os04g17010 retrotransposon protein, putative, unclassified, expressed FN3426-S Chr4 6345957 7191077 0 0 Inversion 0 LOC_Os04g13040 OsFBX124 - F-box domain containing protein, expressed FN3426-S Chr4 6345962 7191077 0 0 Inversion 0 LOC_Os04g13040 OsFBX124 - F-box domain containing protein, expressed FN3426-S Chr7 25288151 Chr3 10130927 0 Translocation 0 LOC_Os07g42250 strictosidine synthase, putative, expressed FN3426-S Chr8 12577665 Chr4 2200028 0 Translocation 0 FN3426-S Chr9 10540260 Chr5 29777448 0 Translocation 0 FN3426-S Chr12 16207505 Chr3 19315244 0 Translocation 0 FN3426-S Chr12 20935540 Chr2 19190558 0 Translocation 0 FN3426-S Chr12 27082008 Chr6 8332597 0 Translocation 0 FN3426-S Chr12 27167969 Chr6 16774720 0 Translocation 0 FN3426-S Chr8 12577665 Chr4 2200028 0 Translocation 0 LOC_Os04g04600 retrotransposon protein, putative, Ty3-gypsy subclass FN3426-S Chr12 16207505 Chr3 19315244 0 Translocation 0 LOC_Os03g33790 retrotransposon protein, putative, unclassified, expressed FN3426-S Chr12 27167969 Chr6 16774720 0 Translocation 0 LOC_Os06g29350 myosin, putative, expressed