FN3566-S Chr2 12762266 T-A 0 0 Single Base Substitution 0 HET FN3566-S Chr3 20650887 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g37260 pentatricopeptide, putative, expressed FN3566-S Chr3 22197217 G-A 0 0 Single Base Substitution 0 HET FN3566-S Chr3 22197218 C-A 0 0 Single Base Substitution 0 HET FN3566-S Chr3 34819371 A-T 0 0 Single Base Substitution 0 Homo FN3566-S Chr4 1538725 C-T 0 0 Single Base Substitution 0 Homo FN3566-S Chr5 5113763 A-T 0 0 Single Base Substitution 0 HET FN3566-S Chr5 12135544 C-T 0 0 Single Base Substitution 0 HET FN3566-S Chr6 1141878 A-T 0 0 Single Base Substitution 0 HET FN3566-S Chr6 2122020 C-T 0 0 Single Base Substitution 0 HET FN3566-S Chr6 4235428 C-G 0 0 Single Base Substitution 0 HET FN3566-S Chr6 11511637 G-A 0 0 Single Base Substitution 0 Homo FN3566-S Chr7 6005862 T-C 0 0 Single Base Substitution 0 Homo FN3566-S Chr7 14026266 C-T 0 0 Single Base Substitution 0 Homo FN3566-S Chr7 18613429 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g31420 transposon protein, putative, unclassified, expressed FN3566-S Chr7 26220038 G-C 0 0 Single Base Substitution 0 Homo FN3566-S Chr8 26241191 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g41540 ubiquitin carboxyl-terminal hydrolase family protein, expressed FN3566-S Chr8 26241196 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g41540 ubiquitin carboxyl-terminal hydrolase family protein, expressed FN3566-S Chr8 26251481 A-T 0 0 Single Base Substitution 0 HET FN3566-S Chr9 21871862 C-G 0 0 Single Base Substitution 0 HET FN3566-S Chr10 5486005 T-A 0 0 Single Base Substitution 0 Homo FN3566-S Chr10 10620143 A-T 0 0 Single Base Substitution 0 HET FN3566-S Chr10 12637212 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g24620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3566-S Chr11 10492052 C-T 0 0 Single Base Substitution 0 HET FN3566-S Chr11 28739085 T-G 0 0 Single Base Substitution 0 Homo FN3566-S Chr12 10274090 A-G 0 0 Single Base Substitution 0 HET FN3566-S Chr1 28197377 28197378 0 0 Insertion 1 HET FN3566-S Chr3 32839658 32839659 0 0 Insertion 1 HET FN3566-S Chr5 2697098 2697100 0 0 Insertion 2 HET FN3566-S Chr1 40372576 40372577 0 0 Deletion 1 HET FN3566-S Chr3 10573003 10573007 0 0 Deletion 4 frameshift_variant Homo LOC_Os03g18870 heat shock protein DnaJ, putative, expressed FN3566-S Chr3 23350324 23350329 0 0 Deletion 5 HET FN3566-S Chr4 33914390 33914420 0 0 Deletion 30 Homo FN3566-S Chr4 35211690 35211697 0 0 Deletion 7 Homo FN3566-S Chr5 24224125 24224137 0 0 Deletion 12 disruptive_inframe_deletion HET LOC_Os05g41350 retrotransposon protein, putative, unclassified, expressed FN3566-S Chr7 1526901 1526941 0 0 Deletion 40 Homo FN3566-S Chr7 18618492 18618496 0 0 Deletion 4 frameshift_variant HET LOC_Os07g31430 phosphate-induced protein 1 conserved region domain containing protein, expressed FN3566-S Chr7 23729150 23729153 0 0 Deletion 3 Homo FN3566-S Chr9 3409287 3409289 0 0 Deletion 2 Homo FN3566-S Chr10 10534461 10534476 0 0 Deletion 15 HET FN3566-S Chr10 21044300 21044302 0 0 Deletion 2 HET FN3566-S Chr11 23712360 23712362 0 0 Deletion 2 HET FN3566-S Chr12 1335146 1335150 0 0 Deletion 4 HET FN3566-S Chr4 4993028 4993143 0 0 Deletion 115 HET FN3566-S Chr12 17891911 17891917 0 0 Deletion 6 HET FN3566-S Chr6 15722001 15733000 0 0 Deletion 10999 LOC_Os06g27770 isoflavone reductase homolog IRL, putative, expressed FN3566-S Chr6 15722001 15733000 0 0 Deletion 10999 LOC_Os06g27780 retrotransposon protein, putative, unclassified FN3566-S Chr1 37913274 38040673 0 0 Inversion 0 FN3566-S Chr1 37913286 38040682 0 0 Inversion 0 FN3566-S Chr5 23595734 23749681 0 0 Inversion 0 FN3566-S Chr5 23595738 23749684 0 0 Inversion 0 FN3566-S Chr6 2558163 2739096 0 0 Inversion 0 LOC_Os06g05660 NAP domain containing protein, putative, expressed FN3566-S Chr6 15588204 15732784 0 0 Inversion 0 LOC_Os06g27530 expressed protein FN3566-S Chr6 16599943 16723119 0 0 Inversion 0 FN3566-S Chr6 21290503 21298762 0 0 Inversion 0 FN3566-S Chr6 21290511 21298779 0 0 Inversion 0 FN3566-S Chr7 17945961 18635845 0 0 Inversion 0 LOC_Os07g30330 cytokinin-O-glucosyltransferase 2, putative, expressed FN3566-S Chr7 17945980 18635844 0 0 Inversion 0 LOC_Os07g30330 cytokinin-O-glucosyltransferase 2, putative, expressed FN3566-S Chr8 12661588 12661985 0 0 Inversion 0 LOC_Os08g21210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3566-S Chr10 7337266 7389315 0 0 Inversion 0 LOC_Os10g13550 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN3566-S Chr10 7337274 7389312 0 0 Inversion 0 LOC_Os10g13550 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN3566-S Chr12 5565905 5707377 0 0 Inversion 0 FN3566-S Chr12 5565926 5707384 0 0 Inversion 0 FN3566-S Chr5 23595734 23749681 0 0 Inversion 0 LOC_Os05g40420 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed FN3566-S Chr5 23595738 23749684 0 0 Inversion 0 LOC_Os05g40420 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed FN3566-S Chr6 2558163 2739096 0 0 Inversion 0 LOC_Os06g05970 DUF581 domain containing protein, expressed FN3566-S Chr6 16599943 16723119 0 0 Inversion 0 LOC_Os06g29300 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3566-S Chr7 17945961 18635845 0 0 Inversion 0 LOC_Os07g31450 CHR4/MI-2-LIKE, putative, expressed FN3566-S Chr7 17945980 18635844 0 0 Inversion 0 LOC_Os07g31450 CHR4/MI-2-LIKE, putative, expressed FN3566-S Chr10 7337266 7389315 0 0 Inversion 0 LOC_Os10g13630 expressed protein FN3566-S Chr10 7337274 7389312 0 0 Inversion 0 LOC_Os10g13630 expressed protein FN3566-S Chr12 5565905 5707377 0 0 Inversion 0 LOC_Os12g10670 AAA-type ATPase family protein, putative, expressed FN3566-S Chr12 5565926 5707384 0 0 Inversion 0 LOC_Os12g10670 AAA-type ATPase family protein, putative, expressed FN3566-S Chr7 2781287 Chr6 15588193 0 Translocation 0 FN3566-S Chr7 2781459 Chr6 15584484 0 Translocation 0 FN3566-S Chr7 3115657 Chr5 24535074 0 Translocation 0 LOC_Os07g06420 expressed protein FN3566-S Chr7 6386905 Chr6 22634306 0 Translocation 0 FN3566-S Chr8 6075137 Chr5 8208592 0 Translocation 0 LOC_Os08g10360 retrotransposon protein, putative, unclassified, expressed FN3566-S Chr11 16760293 Chr1 5706421 0 Translocation 0 FN3566-S Chr11 23446234 Chr2 671709 0 Translocation 0 FN3566-S Chr7 2781287 Chr6 15588193 0 Translocation 0 LOC_Os06g27530 expressed protein FN3566-S Chr7 3115657 Chr5 24535074 0 Translocation 0 LOC_Os05g41890 expressed protein FN3566-S Chr8 6075137 Chr5 8208592 0 Translocation 0 LOC_Os05g14510 retrotransposon protein, putative, unclassified, expressed FN3566-S Chr11 16760293 Chr1 5706421 0 Translocation 0 LOC_Os01g10680 GIL1, putative, expressed