FN3709-S Chr1 1523291 A-T 0 0 Single Base Substitution 0 HET FN3709-S Chr1 1523292 C-T 0 0 Single Base Substitution 0 HET FN3709-S Chr1 10080424 T-C 0 0 Single Base Substitution 0 HET FN3709-S Chr1 10080425 G-T 0 0 Single Base Substitution 0 HET FN3709-S Chr1 13193879 C-T 0 0 Single Base Substitution 0 HET FN3709-S Chr2 10601239 G-A 0 0 Single Base Substitution 0 HET FN3709-S Chr2 33028343 G-A 0 0 Single Base Substitution 0 Homo FN3709-S Chr3 18753937 G-A 0 0 Single Base Substitution 0 HET FN3709-S Chr3 26008623 A-T 0 0 Single Base Substitution 0 HET FN3709-S Chr3 30782526 G-A 0 0 Single Base Substitution 0 Homo FN3709-S Chr4 5216224 G-A 0 0 Single Base Substitution 0 Homo FN3709-S Chr4 6716227 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os04g12190 hAT dimerisation domain-containing protein, putative, expressed FN3709-S Chr4 9274794 T-G 0 0 Single Base Substitution 0 HET FN3709-S Chr4 19334063 G-T 0 0 Single Base Substitution 0 HET FN3709-S Chr4 29940741 G-A 0 0 Single Base Substitution 0 HET FN3709-S Chr4 30454288 T-A 0 0 Single Base Substitution 0 HET FN3709-S Chr4 32485105 G-A 0 0 Single Base Substitution 0 HET FN3709-S Chr4 32485106 G-A 0 0 Single Base Substitution 0 HET FN3709-S Chr5 5971257 G-A 0 0 Single Base Substitution 0 HET FN3709-S Chr5 14276692 A-T 0 0 Single Base Substitution 0 HET FN3709-S Chr5 15767181 C-T 0 0 Single Base Substitution 0 HET FN3709-S Chr6 21320050 C-G 0 0 Single Base Substitution 0 Homo FN3709-S Chr7 566388 G-A 0 0 Single Base Substitution 0 HET FN3709-S Chr8 9186680 C-T 0 0 Single Base Substitution 0 HET FN3709-S Chr8 17534357 T-G 0 0 Single Base Substitution 0 HET FN3709-S Chr8 18075049 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g29490 retrotransposon protein, putative, unclassified, expressed FN3709-S Chr9 2992485 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g06360 retrotransposon, putative, centromere-specific FN3709-S Chr9 4926903 G-A 0 0 Single Base Substitution 0 HET FN3709-S Chr9 8949634 T-A 0 0 Single Base Substitution 0 HET FN3709-S Chr10 3302665 C-T 0 0 Single Base Substitution 0 Homo FN3709-S Chr10 17440549 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os10g33240 expressed protein FN3709-S Chr11 1323170 G-C 0 0 Single Base Substitution 0 Homo FN3709-S Chr11 16579358 C-G 0 0 Single Base Substitution 0 HET FN3709-S Chr12 10691036 A-T 0 0 Single Base Substitution 0 Homo FN3709-S Chr12 10691037 T-A 0 0 Single Base Substitution 0 Homo FN3709-S Chr12 13633439 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os12g23990 retrotransposon protein, putative, unclassified, expressed FN3709-S Chr12 14214821 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g24780 retrotransposon protein, putative, unclassified, expressed FN3709-S Chr1 31657230 31657230 0 0 Insertion 2 HET FN3709-S Chr3 35519478 35519478 0 0 Insertion 3 disruptive_inframe_insertion HET LOC_Os03g62770 expressed protein FN3709-S Chr1 5763183 5763183 0 0 Insertion 6 HET FN3709-S Chr3 8825394 8825394 0 0 Insertion 1 HET FN3709-S Chr4 2928325 2928325 0 0 Insertion 46 HET FN3709-S Chr5 6125832 6125832 0 0 Insertion 1 HET FN3709-S Chr7 12154985 12154985 0 0 Insertion 3 HET FN3709-S Chr8 10714504 10714504 0 0 Insertion 6 HET FN3709-S Chr10 5985524 5985524 0 0 Insertion 1 HET FN3709-S Chr2 3927141 3927147 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os02g07575 expressed protein FN3709-S Chr3 22797797 22797798 0 0 Deletion 1 frameshift_variant HET LOC_Os03g41010 hypothetical protein FN3709-S Chr3 27245653 27245690 0 0 Deletion 37 Homo FN3709-S Chr3 33972688 33972697 0 0 Deletion 9 HET FN3709-S Chr4 6645818 6645824 0 0 Deletion 6 Homo FN3709-S Chr4 8106154 8106177 0 0 Deletion 23 Homo FN3709-S Chr4 14559773 14559777 0 0 Deletion 4 HET FN3709-S Chr4 16249027 16249032 0 0 Deletion 5 frameshift_variant Homo LOC_Os04g27490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3709-S Chr6 6376665 6376667 0 0 Deletion 2 HET FN3709-S Chr7 23881189 23881198 0 0 Deletion 9 Homo FN3709-S Chr8 7643486 7643490 0 0 Deletion 4 HET FN3709-S Chr2 23462995 23462996 0 0 Deletion 1 HET FN3709-S Chr12 9557001 9594000 0 0 Deletion 36999 LOC_Os12g16680 expressed protein FN3709-S Chr12 9557001 9594000 0 0 Deletion 36999 LOC_Os12g16690 zinc finger, C3HC4 type domain containing protein, expressed FN3709-S Chr12 9557001 9594000 0 0 Deletion 36999 LOC_Os12g16710 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3709-S Chr12 9557001 9594000 0 0 Deletion 36999 LOC_Os12g16720 cytochrome P450 71A1, putative, expressed FN3709-S Chr12 9557001 9594000 0 0 Deletion 36999 LOC_Os12g16730 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3709-S Chr12 9557001 9594000 0 0 Deletion 36999 LOC_Os12g16740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15070 ligA, putative, expressed FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15080 expressed protein FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15090 retrotransposon protein, putative, unclassified, expressed FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15100 expressed protein FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15110 expressed protein FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15120 expressed protein FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15130 transposon protein, putative, unclassified FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15140 expressed protein FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15150 leucyl-tRNA synthetase, cytoplasmic, putative, expressed FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15160 phosphate/phosphate translocator, putative, expressed FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15170 zinc finger, C3HC4 type domain containing protein, expressed FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15180 expressed protein FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15190 retrotransposon protein, putative, unclassified FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15200 zinc knuckle family protein, expressed FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15210 retrotransposon protein, putative, unclassified, expressed FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15220 retrotransposon protein, putative, unclassified, expressed FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15230 plant protein of unknown function domain containing protein, expressed FN3709-S Chr5 8548001 8649000 0 0 Deletion 100999 LOC_Os05g15240 expressed protein FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15260 retrotransposon protein, putative, Ty3-gypsy subclass FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15300 expressed protein FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15310 expressed protein FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15330 expressed protein FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15340 retrotransposon protein, putative, unclassified, expressed FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15350 expressed protein FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15360 expressed protein FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15370 ribosomal protein L13, putative, expressed FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15380 lipase class 3, putative, expressed FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15390 retrotransposon protein, putative, Ty3-gypsy subclass FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15400 retrotransposon protein, putative, unclassified FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15410 retrotransposon protein, putative, Ty3-gypsy subclass FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15460 retrotransposon protein, putative, unclassified, expressed FN3709-S Chr5 8653001 8741000 0 0 Deletion 87999 LOC_Os05g15470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15480 retrotransposon protein, putative, unclassified, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15510 cellulase, putative, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15520 DNA-binding protein-related, putative, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15530 aminotransferase domain containing protein, putative, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15540 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15570 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15600 expressed protein FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15610 expressed protein FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15620 expressed protein FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15630 membrane associated DUF588 domain containing protein, putative, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15640 retrotransposon, putative, centromere-specific FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15650 retrotransposon protein, putative, unclassified FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15660 retrotransposon protein, putative, unclassified, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15670 expressed protein FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15680 expressed protein FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15690 expansin precursor, putative, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15700 expressed protein FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15710 hypothetical protein FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15720 expressed protein FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15730 retrotransposon, putative, centromere-specific, expressed FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15740 expressed protein FN3709-S Chr5 8747001 8891000 0 0 Deletion 143999 LOC_Os05g15750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3709-S Chr5 8895001 8939000 0 0 Deletion 43999 LOC_Os05g15760 retrotransposon protein, putative, unclassified FN3709-S Chr5 8895001 8939000 0 0 Deletion 43999 LOC_Os05g15770 glycosyl hydrolase, putative, expressed FN3709-S Chr5 8895001 8939000 0 0 Deletion 43999 LOC_Os05g15780 hypothetical protein FN3709-S Chr5 8895001 8939000 0 0 Deletion 43999 LOC_Os05g15790 expressed protein FN3709-S Chr5 8895001 8939000 0 0 Deletion 43999 LOC_Os05g15800 expressed protein FN3709-S Chr5 8895001 8939000 0 0 Deletion 43999 LOC_Os05g15810 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3709-S Chr5 8895001 8939000 0 0 Deletion 43999 LOC_Os05g15820 retrotransposon protein, putative, unclassified, expressed FN3709-S Chr4 4441568 5046132 0 0 Inversion 0 LOC_Os04g08310 expressed protein FN3709-S Chr12 9595017 9610455 0 0 Inversion 0 LOC_Os12g16760 expressed protein FN3709-S Chr12 9557237 9809778 0 0 Inversion 0 LOC_Os12g16680 expressed protein FN3709-S Chr12 9809799 10134267 0 0 Inversion 0 LOC_Os12g17140 mla1, putative, expressed FN3709-S Chr12 9557237 9809778 0 0 Inversion 0 LOC_Os12g17140 mla1, putative, expressed FN3709-S Chr12 9809799 10134267 0 0 Inversion 0 LOC_Os12g17690 retrotransposon protein, putative, unclassified, expressed FN3709-S Chr5 11410420 Chr4 4973307 0 Translocation 0 LOC_Os04g09350 expressed protein FN3709-S Chr5 28569800 Chr3 1347422 0 Translocation 0 LOC_Os03g03180 uncharacterized Cys-rich domain containing protein, putative, expressed FN3709-S Chr5 28570395 Chr3 1338468 0 Translocation 0 FN3709-S Chr6 21754283 Chr3 7842544 0 Translocation 0 LOC_Os03g14420 cytochrome P450, putative, expressed FN3709-S Chr6 21754284 Chr3 1347193 0 Translocation 0 LOC_Os03g03180 uncharacterized Cys-rich domain containing protein, putative, expressed FN3709-S Chr9 21805690 Chr5 6399762 0 Translocation 0 LOC_Os09g37840 carbohydrate binding protein, putative, expressed FN3709-S Chr11 20126119 Chr3 8260645 0 Translocation 0 LOC_Os11g34330 expressed protein FN3709-S Chr11 20126119 Chr3 8260645 0 Translocation 0 LOC_Os03g15120 imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed