FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28540 stress regulated protein, putative, expressed FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28550 retrotransposon protein, putative, Ty1-copia subclass FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28560 retrotransposon protein, putative, Ty1-copia subclass FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28570 pentatricopeptide, putative, expressed FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28580 expressed protein FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28590 expressed protein FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28600 exo70 exocyst complex subunit family protein, putative, expressed FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28610 expressed protein FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28630 retrotransposon protein, putative, unclassified FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28640 retrotransposon protein, putative, Ty3-gypsy subclass FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28650 retrotransposon, putative, centromere-specific, expressed FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28660 expressed protein FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28670 hypothetical protein FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28680 WD domain, G-beta repeat domain containing protein, expressed FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28690 nucleoporin autopeptidase domain containing protein, expressed FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28700 hypothetical protein FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28710 expressed protein FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28720 hypothetical protein FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28730 protein kinase domain containing protein, expressed FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28740 transposon protein, putative, unclassified, expressed FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28744 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28750 retrotransposon, putative, centromere-specific FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28760 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28770 hypothetical protein FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28780 hypothetical protein FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28790 PRAS-rich protein, putative, expressed FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28800 retrotransposon protein, putative, unclassified FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28810 expressed protein FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28820 retrotransposon, putative, centromere-specific, expressed FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28830 expressed protein FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28840 C4-dicarboxylate transporter/malic acid transport protein, expressed FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28850 expressed protein FN3965-S Chr1 15976001 16179000 0 0 Deletion 202999 LOC_Os01g28870 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16183001 16250000 0 0 Deletion 66999 LOC_Os01g28882 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16183001 16250000 0 0 Deletion 66999 LOC_Os01g28894 retrotransposon protein, putative, unclassified FN3965-S Chr1 16183001 16250000 0 0 Deletion 66999 LOC_Os01g28910 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16183001 16250000 0 0 Deletion 66999 LOC_Os01g28920 retrotransposon, putative, centromere-specific, expressed FN3965-S Chr1 16183001 16250000 0 0 Deletion 66999 LOC_Os01g28930 expressed protein FN3965-S Chr1 16183001 16250000 0 0 Deletion 66999 LOC_Os01g28940 hypothetical protein FN3965-S Chr1 16183001 16250000 0 0 Deletion 66999 LOC_Os01g28950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3965-S Chr1 16183001 16250000 0 0 Deletion 66999 LOC_Os01g28960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3965-S Chr1 16183001 16250000 0 0 Deletion 66999 LOC_Os01g28970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3965-S Chr1 16183001 16250000 0 0 Deletion 66999 LOC_Os01g28980 proton-dependent oligopeptide transport, putative, expressed FN3965-S Chr1 16183001 16250000 0 0 Deletion 66999 LOC_Os01g28989 expressed protein FN3965-S Chr1 16183001 16250000 0 0 Deletion 66999 LOC_Os01g29000 retrotransposon, putative, centromere-specific, expressed FN3965-S Chr1 16183001 16250000 0 0 Deletion 66999 LOC_Os01g29020 retrotransposon, putative, centromere-specific, expressed FN3965-S Chr1 16257001 16269000 0 0 Deletion 11999 LOC_Os01g29040 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16257001 16269000 0 0 Deletion 11999 LOC_Os01g29050 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16257001 16269000 0 0 Deletion 11999 LOC_Os01g29060 transposon protein, putative, unclassified FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29070 retrotransposon protein, putative, unclassified FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29080 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29090 retrotransposon protein, putative, unclassified FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29100 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29104 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29110 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29120 retrotransposon, putative, centromere-specific FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29130 retrotransposon, putative, centromere-specific FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29140 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29150 cytochrome P450 72A1, putative, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29160 retrotransposon protein, putative, Ty1-copia subclass FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29170 retrotransposon protein, putative, Ty1-copia subclass FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29180 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29190 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29200 transposon protein, putative, unclassified FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29210 hypothetical protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29220 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29230 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29240 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29250 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29260 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29270 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29280 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29300 hypothetical protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29310 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29320 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29330 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29340 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29350 hypothetical protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29370 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29380 retrotransposon protein, putative, unclassified FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29390 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29409 tRNA methyltransferase, putative, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29430 tetratricopeptide-like helical, putative, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29450 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29469 dual specificity protein phosphatase, putative, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29488 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29507 retrotransposon, putative, centromere-specific, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29550 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29560 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29580 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29590 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29600 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29610 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29620 retrotransposon protein, putative, Ty1-copia subclass FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29640 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29650 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29660 retrotransposon protein, putative, Ty3-gypsy subclass FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29670 retrotransposon protein, putative, Ty3-gypsy subclass FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29680 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29690 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29700 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29720 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29730 retrotransposon protein, putative, Ty3-gypsy subclass FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29740 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29750 transposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29760 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29780 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29790 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29804 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29820 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29830 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29840 no apical meristem protein, putative, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29850 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29860 expressed protein FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29870 multidrug resistance protein 9, putative, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29880 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr1 16274001 16745000 0 0 Deletion 470999 LOC_Os01g29890 expressed protein FN3965-S Chr1 19924508 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g36000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3965-S Chr1 23930692 23930692 0 0 Insertion 2 HET FN3965-S Chr1 24008893 G-T 0 0 Single Base Substitution 0 HET FN3965-S Chr1 29201533 29201538 0 0 Deletion 5 HET FN3965-S Chr1 5555862 T-G 0 0 Single Base Substitution 0 Homo FN3965-S Chr10 6971988 G-A 0 0 Single Base Substitution 0 Homo FN3965-S Chr11 11930527 11930528 0 0 Deletion 1 frameshift_variant HET LOC_Os11g20570 transposon protein, putative, CACTA, En/Spm sub-class FN3965-S Chr11 1967437 1967441 0 0 Deletion 4 HET FN3965-S Chr11 8055144 8055144 0 0 Insertion 90 HET FN3965-S Chr11 8187127 A-G 0 0 Single Base Substitution 0 Homo FN3965-S Chr12 10966248 10966262 0 0 Deletion 14 HET FN3965-S Chr12 12140437 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g21600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3965-S Chr12 16992742 16992743 0 0 Deletion 1 HET FN3965-S Chr12 22657511 22773205 0 0 Inversion 0 LOC_Os12g36950 CTP synthase, putative, expressed FN3965-S Chr12 22657511 22773205 0 0 Inversion 0 LOC_Os12g37150 ribosomal RNA apurinic site specific lyase, putative, expressed FN3965-S Chr12 2317001 2353000 0 0 Deletion 35999 LOC_Os12g05220 expressed protein FN3965-S Chr12 2317001 2353000 0 0 Deletion 35999 LOC_Os12g05230 ATP-dependent RNA helicase, putative, expressed FN3965-S Chr12 2317001 2353000 0 0 Deletion 35999 LOC_Os12g05240 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3965-S Chr12 2317001 2353000 0 0 Deletion 35999 LOC_Os12g05250 hypothetical protein FN3965-S Chr12 2317001 2353000 0 0 Deletion 35999 LOC_Os12g05260 phytosulfokines precursor, putative, expressed FN3965-S Chr12 2317001 2353000 0 0 Deletion 35999 LOC_Os12g05270 zinc finger, C3HC4 type domain containing protein, expressed FN3965-S Chr12 2317001 2353000 0 0 Deletion 35999 LOC_Os12g05280 zinc finger, C3HC4 type domain containing protein, expressed FN3965-S Chr12 2508110 2508116 0 0 Deletion 6 HET FN3965-S Chr12 3959845 3959845 0 0 Insertion 2 HET FN3965-S Chr12 3959865 3959865 0 0 Insertion 3 HET FN3965-S Chr2 21129918 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g35180 OsRR2 type-A response regulator, expressed FN3965-S Chr2 29136404 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os02g47670 bg55, putative, expressed FN3965-S Chr2 6327510 6327513 0 0 Deletion 3 Homo FN3965-S Chr3 17694455 G-A 0 0 Single Base Substitution 0 Homo FN3965-S Chr3 31583816 T-G 0 0 Single Base Substitution 0 HET FN3965-S Chr3 4751712 A-C 0 0 Single Base Substitution 0 Homo FN3965-S Chr4 32224692 C-T 0 0 Single Base Substitution 0 HET FN3965-S Chr4 703349 703349 0 0 Insertion 857 HET FN3965-S Chr5 18706226 18706251 0 0 Deletion 25 HET FN3965-S Chr6 20980666 T-C 0 0 Single Base Substitution 0 HET FN3965-S Chr6 24549609 C-A 0 0 Single Base Substitution 0 HET FN3965-S Chr6 3228154 3228160 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os06g06830 retrotransposon protein, putative, unclassified, expressed FN3965-S Chr7 10275527 10275529 0 0 Deletion 2 HET FN3965-S Chr7 19044128 T-C 0 0 Single Base Substitution 0 Homo FN3965-S Chr7 19124269 19124276 0 0 Deletion 7 Homo FN3965-S Chr7 19156138 C-T 0 0 Single Base Substitution 0 Homo FN3965-S Chr7 28114110 A-G 0 0 Single Base Substitution 0 Homo FN3965-S Chr8 12596730 A-G 0 0 Single Base Substitution 0 HET FN3965-S Chr8 13678345 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g22750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3965-S Chr8 19974140 T-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os08g32220 retrotransposon protein, putative, Ty3-gypsy subclass FN3965-S Chr8 22067317 22067320 0 0 Deletion 3 inframe_deletion HET LOC_Os08g35030 expressed protein FN3965-S Chr8 22086193 22086206 0 0 Deletion 13 HET FN3965-S Chr8 24102577 24102589 0 0 Deletion 12 HET FN3965-S Chr8 621432 621441 0 0 Deletion 9 HET FN3965-S Chr8 8807498 C-T 0 0 Single Base Substitution 0 HET FN3965-S Chr9 20065083 20065084 0 0 Deletion 1 frameshift_variant HET LOC_Os09g33980 bromodomain protein 103, putative, expressed FN3965-S Chr9 21117664 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g36610 retrotransposon protein, putative, unclassified, expressed