FN424-S Chr5 8568447 8568451 0 0 Deletion 4 LOC_Os05g15090 retrotransposon protein, putative, unclassified, expressed FN424-S Chr10 3734635 3734639 0 0 Deletion 4 LOC_Os10g07090 retrotransposon, putative, centromere-specific FN424-S Chr9 21923038 21923039 0 0 Deletion 1 LOC_Os09g38040 hydrolase, NUDIX family protein, expressed FN424-S Chr5 2622743 2622751 0 0 Deletion 8 LOC_Os05g05320 PPR repeat domain containing protein, putative, expressed FN424-S Chr3 30450101 30450110 0 0 Deletion 9 LOC_Os03g53090 LRR-kinase protein, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08560 retrotransposon protein, putative, unclassified, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08570 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08586 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08592 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08600 retrotransposon protein, putative, unclassified, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08610 retrotransposon protein, putative, unclassified, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08620 retrotransposon protein, putative, unclassified FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08630 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08640 retrotransposon protein, putative, Ty1-copia subclass, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08650 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08655 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08660 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08670 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08690 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08700 ubiquitin family protein, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08710 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08720 retrotransposon protein, putative, unclassified, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08730 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08740 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08750 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08760 ubiquitin family protein, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08790 ubiquitin family protein, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08800 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08810 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08820 homeobox and START domains containing protein, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08830 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08840 phosphate/phosphate translocator, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08850 carotenoid synthesis regulator CarF, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08860 CRS2-associated factor 2, mitochondrial precursor, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08870 retrotransposon protein, putative, Ty1-copia subclass, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08880 hypothetical protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08890 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08900 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08910 hypothetical protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08920 Cupin domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08930 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08950 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08960 Cupin domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08970 Cupin domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08980 cupin domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g08990 Cupin domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09000 Cupin domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09010 Cupin domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09020 Cupin domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09030 hypothetical protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09040 Cupin domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09050 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09060 Cupin domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09080 Cupin domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09090 hypothetical protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09100 RNA recognition motif containing protein, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09110 NB-ARC domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09120 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09130 conserved hypothetical protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09150 retrotransposon protein, putative, unclassified, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09160 retrotransposon protein, putative, unclassified, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09170 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09180 postsynaptic protein CRIPT, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09190 auxin efflux carrier component, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09200 aconitate hydratase protein, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09210 phosphoribosylamine--glycine ligase, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09220 OsFBX262 - F-box domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09230 starch synthase III, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09240 autophagy-related protein, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09250 glyoxalase family protein, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09260 tRNA synthetase, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09270 pentatricopeptide, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09280 hypothetical protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09290 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09300 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09310 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09320 YL1 nuclear protein C-terminal domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09340 bromodomain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09350 gar2, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09360 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09370 polyprenyl synthetase, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09380 OsFBX263 - F-box domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09390 OsFBX264 - F-box domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09400 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09410 OsFBX265 - F-box domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09420 OsFBX266 - F-box domain containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09430 disease resistance protein RPM1, putative, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09440 expressed protein FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09450 OsFBL41 - F-box domain and LRR containing protein, expressed FN424-S Chr8 4928001 5482000 0 0 Deletion 554000 LOC_Os08g09460 OsFBX267 - F-box domain containing protein, expressed FN424-S Chr8 12634517 12634531 0 0 Deletion 14 FN424-S Chr7 7535613 7535625 0 0 Deletion 12 FN424-S Chr3 3831835 3831842 0 0 Deletion 7 FN424-S Chr8 10388059 10388065 0 0 Deletion 6 FN424-S Chr11 13894121 13894126 0 0 Deletion 5 FN424-S Chr12 1547162 1547164 0 0 Deletion 2 FN424-S Chr7 11736066 11736067 0 0 Deletion 1 FN424-S Chr12 24671820 24671821 0 0 Deletion 1 FN424-S Chr11 6460383 6460384 0 0 Deletion 1 FN424-S Chr11 13091414 13091415 0 0 Deletion 1 FN424-S Chr2 15721186 15721187 0 0 Deletion 1 FN424-S Chr3 30888327 30888328 0 0 Deletion 1 FN424-S Chr7 14346405 14346406 0 0 Deletion 1 FN424-S Chr8 19995140 19995141 0 0 Deletion 1 FN424-S Chr5 13395866 13395868 0 0 Deletion 2 FN424-S Chr8 1190954 1190957 0 0 Deletion 3 FN424-S Chr3 13387562 13387566 0 0 Deletion 4 FN424-S Chr7 19998694 19998698 0 0 Deletion 4 FN424-S Chr12 10279536 10279541 0 0 Deletion 5 FN424-S Chr10 11839869 11839881 0 0 Deletion 12 FN424-S Chr4 1787559 1787573 0 0 Deletion 14 FN424-S Chr7 18937001 18950000 0 0 Deletion 13000 FN424-S Chr1 14944125 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr1 23974691 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN424-S Chr1 31702791 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr1 39075748 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr1 39414631 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr2 3671083 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr2 16306274 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN424-S Chr2 25655445 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN424-S Chr2 25655446 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN424-S Chr2 25655453 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN424-S Chr3 13542058 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN424-S Chr3 15224954 T-G 0 0 Single Base Substitution 0 INTRON HET FN424-S Chr3 22734726 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN424-S Chr3 29786023 T-C 0 0 Single Base Substitution 0 INTRON HET FN424-S Chr3 31934275 A-G 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN424-S Chr3 32092242 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr3 33232689 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr3 34146972 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN424-S Chr3 34521579 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr4 2596995 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr4 4613758 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr4 6125376 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr4 9278356 A-T 0 0 Single Base Substitution 0 INTRON HET FN424-S Chr4 26084455 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr4 26084456 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr4 28935132 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN424-S Chr4 30040177 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr5 4392767 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g08070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN424-S Chr6 9772501 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr6 9772502 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr6 9873073 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr6 26078952 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN424-S Chr7 13341086 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr7 14823477 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr7 22056743 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN424-S Chr7 27018076 T-C 0 0 Single Base Substitution 0 INTRON HET FN424-S Chr8 1938830 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr8 2388462 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN424-S Chr8 3153453 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr9 4635219 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN424-S Chr9 10069936 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr9 20548518 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN424-S Chr10 3713423 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN424-S Chr10 11686857 G-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN424-S Chr11 9453142 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN424-S Chr11 9453143 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN424-S Chr12 5502979 C-T 0 0 Single Base Substitution 0 INTRON HET FN424-S Chr12 9442328 G-A 0 0 Single Base Substitution 0 INTRON HET FN424-S Chr12 19293400 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g32010 expressed protein FN424-S Chr12 25363254 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN424-S Chr11 2662104 2662104 0 0 Insertion 2 FN424-S Chr4 27542955 27542955 0 0 Insertion 12 FN424-S Chr10 11928195 11928195 0 0 Insertion 1 FN424-S Chr3 459719 459719 0 0 Insertion 1 FN424-S Chr8 23404387 23404387 0 0 Insertion 1 FN424-S Chr12 10391163 11402599 0 0 Inversion 1011436 LOC_Os12g18080 retrotransposon protein, putative, unclassified, expressed FN424-S Chr3 26766570 27037831 0 0 Inversion 271261 FN424-S Chr3 32129410 32385687 0 0 Inversion 256277 LOC_Os03g56360 transposon protein, putative, unclassified, expressed FN424-S Chr3 32129410 32385687 0 0 Inversion 256277 LOC_Os03g56840 GTP-binding protein, putative, expressed FN424-S Chr8 4848391 5517091 0 0 Inversion 668700 FN424-S Chr8 4848402 5517101 0 0 Inversion 668699 FN424-S Chr8 12951566 12984920 0 0 Inversion 33354 FN424-S Chr12 11401496 Chr7 23879145 0 Translocation 0 FN424-S Chr12 11402592 Chr7 23879109 0 Translocation 0 FN424-S Chr3 10134117 Chr1 18684954 0 Translocation 0 LOC_Os01g33960 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN424-S Chr3 12222754 Chr1 31814583 0 Translocation 0 LOC_Os03g21370 expressed protein FN424-S Chr3 12222754 Chr1 31814583 0 Translocation 0 LOC_Os01g55270 SGS domain containing protein, expressed FN424-S Chr3 12222766 Chr1 31813536 0 Translocation 0 LOC_Os03g21370 expressed protein FN424-S Chr3 12222766 Chr1 31813536 0 Translocation 0 LOC_Os01g55270 SGS domain containing protein, expressed FN424-S Chr6 23949050 Chr3 5096504 0 Translocation 0 FN424-S Chr8 14785734 Chr1 20577297 0 Translocation 0 FN424-S Chr8 28318950 Chr5 5289560 0 Translocation 0 FN424-S Chr9 1877617 Chr2 16489309 0 Translocation 0 LOC_Os02g27850 retrotransposon protein, putative, unclassified, expressed