FN4411-S Chr1 5235767 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr1 24422738 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g42920 retrotransposon protein, putative, Ty1-copia subclass, expressed FN4411-S Chr1 28532504 G-T 0 0 Single Base Substitution 0 INTRON HET FN4411-S Chr1 30529441 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr2 1799602 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr2 4127349 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN4411-S Chr2 10658108 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4411-S Chr2 20996897 G-C 0 0 Single Base Substitution 0 START_GAINED HOMO FN4411-S Chr2 22122633 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4411-S Chr2 31844879 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4411-S Chr3 8122050 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4411-S Chr3 12545523 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr3 17220471 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4411-S Chr3 18835293 C-T 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN4411-S Chr4 2828590 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN4411-S Chr4 21878377 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr4 22163134 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN4411-S Chr4 22288026 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4411-S Chr5 2323930 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr5 3246711 A-T 0 0 Single Base Substitution 0 INTRON HET FN4411-S Chr5 8063655 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g14330 retrotransposon protein, putative, unclassified, expressed FN4411-S Chr5 27369589 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr6 10794654 C-T 0 0 Single Base Substitution 0 INTRON HET FN4411-S Chr6 16294958 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4411-S Chr6 17378618 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN4411-S Chr6 27026994 C-A 0 0 Single Base Substitution 0 INTRON HET FN4411-S Chr7 18674541 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr7 24671412 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr8 10583573 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr9 1816789 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN4411-S Chr9 6505140 G-A 0 0 Single Base Substitution 0 INTRON HET FN4411-S Chr9 8333803 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr9 11544240 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4411-S Chr9 15320766 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g25540 receptor-like protein kinase 2 precursor, putative, expressed FN4411-S Chr9 16742093 C-T 0 0 Single Base Substitution 0 INTRON HET FN4411-S Chr10 1352580 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr10 4732903 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr10 11364343 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g22010 retrotransposon protein, putative, unclassified, expressed FN4411-S Chr10 11379262 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g22030 retrotransposon protein, putative, unclassified, expressed FN4411-S Chr11 4204175 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr11 8433900 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g14970 retrotransposon protein, putative, unclassified, expressed FN4411-S Chr11 15392279 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr11 18851165 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4411-S Chr11 19378177 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr11 20055148 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr11 20304055 A-G 0 0 Single Base Substitution 0 INTRON HET FN4411-S Chr11 20734080 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g35380 expressed protein FN4411-S Chr12 3613661 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr12 21790628 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4411-S Chr1 24653428 24653429 0 0 Deletion 1 HOMO FN4411-S Chr2 28724271 28724292 0 0 Deletion 21 HOMO FN4411-S Chr2 35819818 35819819 0 0 Deletion 1 HOMO FN4411-S Chr3 10336810 10336811 0 0 Deletion 1 HOMO FN4411-S Chr3 12276092 12276100 0 0 Deletion 8 HOMO FN4411-S Chr3 36197599 36197600 0 0 Deletion 1 HOMO FN4411-S Chr4 34164823 34164836 0 0 Deletion 13 HOMO FN4411-S Chr6 5948265 5948266 0 0 Deletion 1 HOMO FN4411-S Chr6 21806361 21806362 0 0 Deletion 1 HOMO FN4411-S Chr7 25108189 25108191 0 0 Deletion 2 HOMO FN4411-S Chr8 4195753 4195754 0 0 Deletion 1 HOMO FN4411-S Chr10 1100019 1100024 0 0 Deletion 5 HOMO FN4411-S Chr11 19387404 19387408 0 0 Deletion 4 HOMO FN4411-S Chr12 6730810 6730816 0 0 Deletion 6 HOMO FN4411-S Chr1 2855673 2855679 0 0 Deletion 6 HOMO FN4411-S Chr1 7861415 7861419 0 0 Deletion 4 HOMO FN4411-S Chr3 23305307 23305317 0 0 Deletion 10 HOMO FN4411-S Chr4 7081112 7081114 0 0 Deletion 2 HOMO FN4411-S Chr5 10963299 10963300 0 0 Deletion 1 HOMO FN4411-S Chr5 29921175 29921529 0 0 Deletion 354 HOMO FN4411-S Chr6 16163800 16163877 0 0 Deletion 77 HOMO LOC_Os06g28410 retrotransposon protein, putative, unclassified, expressed FN4411-S Chr7 21545593 21545599 0 0 Deletion 6 HOMO FN4411-S Chr7 26828542 26828543 0 0 Deletion 1 HOMO FN4411-S Chr7 27535793 27535794 0 0 Deletion 1 HOMO FN4411-S Chr9 114900 114902 0 0 Deletion 2 HOMO LOC_Os09g01100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4411-S Chr9 8820386 8820387 0 0 Deletion 1 HOMO FN4411-S Chr10 22120164 22120187 0 0 Deletion 23 HOMO FN4411-S Chr12 17140051 17140052 0 0 Deletion 1 HOMO FN4411-S Chr1 27614212 27614212 0 0 Insertion 1 HET FN4411-S Chr1 9464647 9464647 0 0 Insertion 3 HET FN4411-S Chr1 15346254 15346254 0 0 Insertion 76 HET FN4411-S Chr1 20735859 20735859 0 0 Insertion 3 HET FN4411-S Chr4 703349 703349 0 0 Insertion 12 HET FN4411-S Chr4 32412606 32412606 0 0 Insertion 60 HET FN4411-S Chr5 11563626 11563626 0 0 Insertion 2 HET FN4411-S Chr6 4671122 4671122 0 0 Insertion 65 HET FN4411-S Chr8 14504369 14504369 0 0 Insertion 48 HET FN4411-S Chr9 8031922 8031922 0 0 Insertion 2 HET FN4411-S Chr9 14182830 14182830 0 0 Insertion 2 HET FN4411-S Chr10 752229 752229 0 0 Insertion 1 HET LOC_Os10g02190 retrotransposon protein, putative, unclassified, expressed FN4411-S Chr11 5481470 5481470 0 0 Insertion 6 HET FN4411-S Chr1 15196369 15196525 0 0 Inversion 157 HET FN4411-S Chr5 20987359 21755611 0 0 Inversion 768253 HET