FN459-S Chr7 12478826 12478835 0 0 Deletion 9 LOC_Os07g22260 retrotransposon, putative, centromere-specific FN459-S Chr7 17834185 17834186 0 0 Deletion 1 LOC_Os07g30190 retrotransposon protein, putative, unclassified, expressed FN459-S Chr1 3359906 3359912 0 0 Deletion 6 LOC_Os01g07130 expressed protein FN459-S Chr1 3359906 3359912 0 0 Deletion 6 LOC_Os01g07120 AP2 domain containing protein, expressed FN459-S Chr3 21731227 21731240 0 0 Deletion 13 LOC_Os03g39110 expressed protein FN459-S Chr1 305208 306069 0 0 Deletion 861 LOC_Os01g01600 ethylene-responsive protein related, putative, expressed FN459-S Chr2 28053001 28066000 0 0 Deletion 13000 LOC_Os02g46040 retrotransposon protein, putative, unclassified, expressed FN459-S Chr2 28053001 28066000 0 0 Deletion 13000 LOC_Os02g46050 retrotransposon protein, putative, unclassified, expressed FN459-S Chr2 28053001 28066000 0 0 Deletion 13000 LOC_Os02g46060 retrotransposon protein, putative, Ty1-copia subclass FN459-S Chr5 16933001 16950000 0 0 Deletion 17000 LOC_Os05g28880 expressed protein FN459-S Chr5 16933001 16950000 0 0 Deletion 17000 LOC_Os05g28900 retrotransposon protein, putative, unclassified, expressed FN459-S Chr5 16933001 16950000 0 0 Deletion 17000 LOC_Os05g28910 retrotransposon protein, putative, unclassified, expressed FN459-S Chr5 16933001 16950000 0 0 Deletion 17000 LOC_Os05g28890 retrotransposon protein, putative, unclassified FN459-S Chr5 16933001 16950000 0 0 Deletion 17000 LOC_Os05g28920 retrotransposon, putative, centromere-specific, expressed FN459-S Chr9 6854001 6865000 0 0 Deletion 11000 LOC_Os09g12130 retrotransposon protein, putative, unclassified, expressed FN459-S Chr9 6854001 6865000 0 0 Deletion 11000 LOC_Os09g12140 retrotransposon protein, putative, unclassified, expressed FN459-S Chr11 9337001 9348000 0 0 Deletion 11000 LOC_Os11g16820 retrotransposon protein, putative, unclassified, expressed FN459-S Chr11 9337001 9348000 0 0 Deletion 11000 LOC_Os11g16830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN459-S Chr7 7428177 7428191 0 0 Deletion 14 FN459-S Chr7 9706853 9706858 0 0 Deletion 5 FN459-S Chr2 7458264 7458267 0 0 Deletion 3 FN459-S Chr3 12132051 12132054 0 0 Deletion 3 FN459-S Chr11 17001427 17001430 0 0 Deletion 3 FN459-S Chr5 6406743 6406744 0 0 Deletion 1 FN459-S Chr7 12685920 12685921 0 0 Deletion 1 FN459-S Chr10 1847471 1847472 0 0 Deletion 1 FN459-S Chr11 7923218 7923219 0 0 Deletion 1 FN459-S Chr11 7223675 7223679 0 0 Deletion 4 FN459-S Chr12 7366722 7366726 0 0 Deletion 4 FN459-S Chr2 29058171 29058175 0 0 Deletion 4 FN459-S Chr3 21462027 21462032 0 0 Deletion 5 FN459-S Chr11 27663237 27663243 0 0 Deletion 6 FN459-S Chr2 10314475 10314482 0 0 Deletion 7 FN459-S Chr7 12846843 12846858 0 0 Deletion 15 FN459-S Chr12 20855183 20855206 0 0 Deletion 23 FN459-S Chr1 32569759 32569783 0 0 Deletion 24 FN459-S Chr1 14484599 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN459-S Chr1 19737688 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN459-S Chr1 24169127 T-A 0 0 Single Base Substitution 0 INTRON HET FN459-S Chr1 28819394 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN459-S Chr1 36020877 T-C 0 0 Single Base Substitution 0 INTRON HET FN459-S Chr1 40150178 G-A 0 0 Single Base Substitution 0 INTRON HET FN459-S Chr2 10298364 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN459-S Chr2 18009544 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN459-S Chr2 22964042 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g38010 copper methylamine oxidase precursor, putative, expressed FN459-S Chr2 25456535 T-A 0 0 Single Base Substitution 0 INTRON HET FN459-S Chr2 32671215 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g53380 expressed protein FN459-S Chr3 10988044 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g19530 DEAD-box ATP-dependent RNA helicase, putative, expressed FN459-S Chr3 10988047 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g19530 DEAD-box ATP-dependent RNA helicase, putative, expressed FN459-S Chr3 12271237 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN459-S Chr3 21676043 C-A 0 0 Single Base Substitution 0 INTRON HET FN459-S Chr5 336637 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN459-S Chr5 2781782 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN459-S Chr5 9719604 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g17040 retrotransposon protein, putative, unclassified, expressed FN459-S Chr5 9719606 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os05g17040 retrotransposon protein, putative, unclassified, expressed FN459-S Chr5 10217522 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g17780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN459-S Chr5 23226998 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g39570 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN459-S Chr6 14020096 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN459-S Chr6 14626674 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g24970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN459-S Chr6 16940258 G-A 0 0 Single Base Substitution 0 INTRON HET FN459-S Chr7 5521748 C-G 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN459-S Chr7 13330390 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN459-S Chr8 6542377 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN459-S Chr8 7577360 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g12790 cytokinin inducible protein, putative, expressed FN459-S Chr8 18279346 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN459-S Chr8 22037782 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN459-S Chr11 23980755 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN459-S Chr9 9472339 9472339 0 0 Insertion 2 FN459-S Chr1 14389331 14594704 0 0 Inversion 205373 FN459-S Chr12 8041450 8653164 0 0 Inversion 611714 FN459-S Chr12 20914424 20935397 0 0 Inversion 20973 FN459-S Chr12 20914435 20935400 0 0 Inversion 20965 FN459-S Chr3 35362408 35867888 0 0 Inversion 505480 LOC_Os03g62430 OsWAK28 - OsWAK receptor-like protein kinase, expressed FN459-S Chr10 10307075 Chr3 32459731 0 Translocation 0