FN2268-S Chr1 6601618 6601626 0 0 Deletion 8 INTRON Hetero FN2268-S Chr1 15538338 15538346 0 0 Deletion 8 INTERGENIC Homo FN2268-S Chr1 24482990 24483001 0 0 Deletion 11 INTERGENIC Hetero FN2268-S Chr1 34936968 34936969 0 0 Deletion 1 INTERGENIC Hetero FN2268-S Chr2 36419917 36419934 0 0 Deletion 17 INTERGENIC Hetero FN2268-S Chr3 2320327 2320328 0 0 Deletion 1 INTERGENIC Hetero FN2268-S Chr3 4149589 4149591 0 0 Deletion 2 INTERGENIC Hetero FN2268-S Chr3 13406077 13406080 0 0 Deletion 3 INTERGENIC Hetero FN2268-S Chr4 33757825 33757827 0 0 Deletion 2 INTERGENIC Hetero FN2268-S Chr5 4259014 4259025 0 0 Deletion 11 INTERGENIC Hetero FN2268-S Chr6 8635139 8635141 0 0 Deletion 2 INTERGENIC Hetero FN2268-S Chr6 16959077 16959081 0 0 Deletion 4 INTERGENIC Hetero FN2268-S Chr6 23472678 23472683 0 0 Deletion 5 INTERGENIC Homo FN2268-S Chr6 28301868 28301872 0 0 Deletion 4 INTERGENIC Homo FN2268-S Chr7 5241372 5241375 0 0 Deletion 3 INTRON Hetero FN2268-S Chr7 9916526 9916533 0 0 Deletion 7 INTRON Hetero FN2268-S Chr7 10177909 10177917 0 0 Deletion 8 INTERGENIC Hetero FN2268-S Chr8 13821947 13821987 0 0 Deletion 40 INTERGENIC Hetero FN2268-S Chr8 26897994 26897995 0 0 Deletion 1 INTERGENIC Hetero FN2268-S Chr8 28254007 28254009 0 0 Deletion 2 INTRON Hetero FN2268-S Chr8 28506548 28506550 0 0 Deletion 2 INTERGENIC Hetero FN2268-S Chr9 12356754 12356756 0 0 Deletion 2 INTERGENIC Hetero FN2268-S Chr10 18830442 18830443 0 0 Deletion 1 INTERGENIC Homo FN2268-S Chr2 26306457 26306457 0 0 Insertion 1 INTERGENIC Homo FN2268-S Chr3 10486391 10486391 0 0 Insertion 7 INTRON Hetero FN2268-S Chr5 19905754 19905754 0 0 Insertion 4 INTERGENIC Hetero FN2268-S Chr5 27601101 27601101 0 0 Insertion 4 INTERGENIC Hetero FN2268-S Chr9 16538394 16538394 0 0 Insertion 2 FRAME_SHIFT Hetero OsKitaake09g120500 CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=Length=41 FN2268-S Chr10 16021579 16021579 0 0 Insertion 1 INTRON Hetero FN2268-S Chr11 4069927 4069927 0 0 Insertion 2 INTRON Hetero FN2268-S Chr11 12641742 12641742 0 0 Insertion 3 INTERGENIC Hetero FN2268-S Chr5 26752004 27547621 0 0 Inversion 0 Hetero FN2268-S Chr5 26752031 27547629 0 0 Inversion 0 Hetero FN2268-S Chr3 1489001 1499000 0 0 Deletion 9999 OsKitaake03g021400 BCH_GENLU Beta-carotene 3-hydroxylase, chloroplastic OS=Gentiana lutea GN=BHY PE=2 SV=Length=32 FN2268-S Chr3 1489001 1499000 0 0 Deletion 9999 OsKitaake03g021500 PINX1_MOUSE PIN2/TERF1-interacting telomerase inhibitor 1 OS=Mus musculus GN=Pinx1 PE=1 SV=Length=33 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g143200 C7J333_ORYSJ Os05g0379400 protein OS=Oryza sativa subsp. japonica GN=Os05g0379400 PE=4 SV=Length=18 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g143300 RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=Length= FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g143400 RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=Length= FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g143600 RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=Length= FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g143601 Hypothetical protein FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g143602 Q6L4D5_ORYSJ Os05g0380800 protein OS=Oryza sativa subsp. japonica GN=Os05g0380800 PE=4 SV=Length=144 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g143900 CML15_ORYSJ Probable calcium-binding protein CML15 OS=Oryza sativa subsp. japonica GN=CML15 PE=2 SV= FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g144100 B9FPB6_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_18361 PE=4 SV=Length=12 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g144200 A0A0D3G714_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=17 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g144300 A0A0E0PLS7_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=49 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g144400 A0A0E0PLS8_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=109 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g144600 AGD11_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g144700 CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=Length=80 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g144800 C94A1_VICSA Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=Length=51 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g144900 ANXD4_ARATH Annexin D4 OS=Arabidopsis thaliana GN=ANN4 PE=2 SV=Length=31 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g145000 ANXD3_ARATH Annexin D3 OS=Arabidopsis thaliana GN=ANN3 PE=2 SV=Length=32 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g145100 FIS1A_ARATH Mitochondrial fission 1 protein A OS=Arabidopsis thaliana GN=FIS1A PE=1 SV=Length=17 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g145000 ANXD3_ARATH Annexin D3 OS=Arabidopsis thaliana GN=ANN3 PE=2 SV=Length=32 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g145100 FIS1A_ARATH Mitochondrial fission 1 protein A OS=Arabidopsis thaliana GN=FIS1A PE=1 SV=Length=17 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g145200 AP3M_ARATH AP-3 complex subunit mu OS=Arabidopsis thaliana GN=AP3M PE=1 SV=Length=41 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g145300 Q6AV17_ORYSJ Os05g0383200 protein OS=Oryza sativa subsp. japonica GN=Os05g0383200 PE=4 SV=Length=19 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g145500 AP37_ORYSJ Aspartyl protease 37 OS=Oryza sativa subsp. japonica GN=AP37 PE=3 SV=Length=46 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g145600 AB23G_ARATH ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=Length=62 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g145700 UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=Length=44 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g145800 A0A0E0PLU9_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=22 FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g146000 HPAT3_ARATH Hydroxyproline O-arabinosyltransferase 3 OS=Arabidopsis thaliana GN=HPAT3 PE=1 SV=Length FN2268-S Chr5 18381001 18760000 0 0 Deletion 378999 OsKitaake05g146100 LRP1_ARATH Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana GN=LRP1 PE=1 SV=Length=32 FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g146400 MGP4_ARATH UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 OS=Arabidopsis thaliana GN=MGP4 FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g146500 Q60E67_ORYSJ Os05g0386900 protein OS=Oryza sativa subsp. japonica GN=Os05g0386900 PE=2 SV=Length=17 FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g146600 SQD1_SPIOL UDP-sulfoquinovose synthase, chloroplastic OS=Spinacia oleracea GN=SQD1 PE=1 SV=Length=48 FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g146601 B8AXU0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19803 PE=4 SV=Len FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g146700 CCR35_ARATH Serine/threonine-protein kinase-like protein At3g51990 OS=Arabidopsis thaliana GN=At3g51 FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g146800 NAA40_DANRE N-alpha-acetyltransferase 40 OS=Danio rerio GN=naa40 PE=2 SV=Length=23 FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g146900 NTAQ1_ORYSJ Protein N-terminal glutamine amidohydrolase OS=Oryza sativa subsp. japonica GN=Os05g0387 FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g147000 NADK3_ORYSJ Putative NAD kinase 3 OS=Oryza sativa subsp. japonica GN=Os05g0388400 PE=3 SV=Length=49 FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g147100 RK1_ARATH 50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=Length=34 FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g147200 RER4_ARATH Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana GN=RER4 PE=2 SV=Lengt FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g147300 AP2L4_ARATH AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thaliana GN=A FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g147400 A0A0E0PLY9_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=26 FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g147500 LSM5_ARATH Sm-like protein LSM5 OS=Arabidopsis thaliana GN=LSM5 PE=1 SV=Length=8 FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g147501 A0A0D9ZYN8_9ORYZ Uncharacterized protein OS=Oryza glumipatula PE=4 SV=Length=12 FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g147600 FBT7_ARATH Probable folate-biopterin transporter 7 OS=Arabidopsis thaliana GN=At1g64890 PE=2 SV=Leng FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g147700 CCR4D_ARATH Carbon catabolite repressor protein 4 homolog 4 OS=Arabidopsis thaliana GN=CCR4-4 PE=1 S FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g147800 RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=Length=44 FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g147900 CDKC1_ORYSJ Cyclin-dependent kinase C-1 OS=Oryza sativa subsp. japonica GN=CDKC-1 PE=2 SV=Length=51 FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g148000 DEAH6_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 OS=Arabidopsis thalia FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g148100 PLA15_ARATH Phospholipase A1-Igamma1, chloroplastic OS=Arabidopsis thaliana GN=At1g06800 PE=1 SV=Len FN2268-S Chr5 18776001 18956000 0 0 Deletion 179999 OsKitaake05g148200 FZL_ARATH Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana GN=FZL PE=1 FN2268-S Chr1 616952 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN2268-S Chr1 29765450 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr1 37626055 G-A 0 0 Single Base Substitution 0 INTRON Hetero FN2268-S Chr1 37626063 G-A 0 0 Single Base Substitution 0 INTRON Hetero FN2268-S Chr1 39351953 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr1 41648407 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr2 7002590 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr2 15428535 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr2 21584234 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr2 23027292 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr2 31743043 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr3 599439 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr3 2547092 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr3 16766506 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2268-S Chr3 17522023 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr3 19105757 G-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN2268-S Chr3 22104467 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr3 22418904 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr3 23436785 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr3 30084677 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr3 30669204 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr4 1852815 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2268-S Chr4 3910919 C-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr4 11007228 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2268-S Chr4 11429998 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr4 14038529 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr4 16649258 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo OsKitaake04g081600 BISS_ZINOF (S)-beta-bisabolene synthase OS=Zingiber officinale GN=TPS1 PE=1 SV=Length=55 FN2268-S Chr4 16982494 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr4 18946454 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr4 21994218 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr5 270700 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr5 3366136 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr5 3848813 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2268-S Chr5 7544121 T-G 0 0 Single Base Substitution 0 STOP_GAINED Homo OsKitaake05g075600 RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=Length=97 FN2268-S Chr5 24714430 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr6 18232112 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr6 22659513 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr6 26992346 A-C 0 0 Single Base Substitution 0 INTRON Homo FN2268-S Chr7 7731522 G-A 0 0 Single Base Substitution 0 INTRON Hetero FN2268-S Chr7 7934372 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr7 13156344 C-T 0 0 Single Base Substitution 0 INTRON Hetero FN2268-S Chr7 16573125 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr7 26229232 T-A 0 0 Single Base Substitution 0 INTRON Hetero FN2268-S Chr7 27557923 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN2268-S Chr8 5089563 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME Hetero FN2268-S Chr8 14165396 G-A 0 0 Single Base Substitution 0 INTRON Homo FN2268-S Chr8 16941850 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN2268-S Chr9 3524986 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr9 7064250 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr9 11428216 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr9 13318503 A-T 0 0 Single Base Substitution 0 INTRON Hetero FN2268-S Chr9 15186287 G-C 0 0 Single Base Substitution 0 INTRON Hetero FN2268-S Chr10 12473375 C-G 0 0 Single Base Substitution 0 INTRON Hetero FN2268-S Chr10 15164071 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake10g096300 A0A0E0QZ46_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=16 FN2268-S Chr10 23726990 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr11 292577 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo OsKitaake11g002550 G2XLI1_ORYGL Hypothetical_protein OS=Oryza glaberrima GN=Ogl12g0021P10_4 PE=4 SV=Length=21 FN2268-S Chr11 292578 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo OsKitaake11g002550 G2XLI1_ORYGL Hypothetical_protein OS=Oryza glaberrima GN=Ogl12g0021P10_4 PE=4 SV=Length=21 FN2268-S Chr11 9331909 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr11 14252078 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr11 14674394 A-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN2268-S Chr11 19147727 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr11 22800217 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr12 2486577 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2268-S Chr12 10913766 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr12 12631129 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr12 13748374 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr12 14826435 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2268-S Chr12 26395043 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero