FN2676-S Chr1 10307576 10307594 0 0 Deletion 18 CODON_CHANGE_PLUS_CODON_DELETION Hetero FN2676-S Chr3 6726470 6726472 0 0 Deletion 2 INTERGENIC Hetero FN2676-S Chr3 13457050 13457053 0 0 Deletion 3 INTERGENIC Hetero FN2676-S Chr3 18583447 18583451 0 0 Deletion 4 INTERGENIC Hetero FN2676-S Chr4 19342246 19342256 0 0 Deletion 10 INTERGENIC Hetero FN2676-S Chr5 26076086 26076093 0 0 Deletion 7 INTERGENIC Hetero FN2676-S Chr6 3069375 3069382 0 0 Deletion 7 INTERGENIC Homo FN2676-S Chr6 6844560 6844565 0 0 Deletion 5 FRAME_SHIFT Homo OsKitaake06g088800 FTSH6_ORYSJ ATP-dependent zinc metalloprotease FTSH 6, chloroplastic OS=Oryza sativa subsp. japonica FN2676-S Chr6 7618949 7618965 0 0 Deletion 16 INTERGENIC Homo FN2676-S Chr7 10744162 10744172 0 0 Deletion 10 FRAME_SHIFT Homo OsKitaake07g102300 A0A0E0Q6P9_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=36 FN2676-S Chr7 18321435 18321450 0 0 Deletion 15 INTERGENIC Homo FN2676-S Chr8 17486419 17486421 0 0 Deletion 2 INTERGENIC Hetero FN2676-S Chr9 529896 529897 0 0 Deletion 1 INTERGENIC Hetero FN2676-S Chr10 1473901 1473902 0 0 Deletion 1 INTERGENIC Hetero FN2676-S Chr10 12834913 12834915 0 0 Deletion 2 INTERGENIC Hetero FN2676-S Chr10 18859434 18859436 0 0 Deletion 2 INTERGENIC Hetero FN2676-S Chr11 3904476 3904478 0 0 Deletion 2 INTERGENIC Homo FN2676-S Chr1 13129988 13129988 0 0 Insertion 2 INTERGENIC Hetero FN2676-S Chr3 3052306 3052306 0 0 Insertion 2 INTERGENIC Hetero FN2676-S Chr6 5682607 5682607 0 0 Insertion 3 INTERGENIC Hetero FN2676-S Chr9 12635637 12635637 0 0 Insertion 2 INTERGENIC Hetero FN2676-S Chr10 16232133 16232133 0 0 Insertion 2 INTERGENIC Hetero FN2676-S Chr9 16939953 Chr5 24198444 0 Translocation 0 Hetero OsKitaake05g215400 RL30_MAIZE 60S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=3 SV=Length=11 FN2676-S Chr9 16940098 Chr5 24198447 0 Translocation 0 Hetero OsKitaake05g215400 RL30_MAIZE 60S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=3 SV=Length=11 FN2676-S Chr7 9553748 Chr3 26400581 0 Translocation 0 Homo FN2676-S Chr7 9555538 Chr3 26400595 0 Translocation 0 Homo FN2676-S Chr6 23306333 23481737 0 0 Inversion 0 Hetero OsKitaake06g205400 A0A0D3GIE5_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=14 FN2676-S Chr6 23306340 23481736 0 0 Inversion 0 Hetero OsKitaake06g205400 A0A0D3GIE5_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=14 FN2676-S Chr7 9007454 9555581 0 0 Inversion 0 Homo FN2676-S Chr7 9553739 9561926 0 0 Inversion 0 Homo FN2676-S Chr12 26287001 26320000 0 0 Deletion 32999 OsKitaake12g218400 CYSK1_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=Length=32 FN2676-S Chr12 26287001 26320000 0 0 Deletion 32999 OsKitaake12g218550 A0A0E0BVH0_9ORYZ Uncharacterized protein OS=Oryza glumipatula PE=4 SV=Length=19 FN2676-S Chr12 26469001 26485000 0 0 Deletion 15999 OsKitaake12g219400 ADF11_ORYSJ Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=Length=1 FN2676-S Chr12 26469001 26485000 0 0 Deletion 15999 OsKitaake12g219500 Q2QLT7_ORYSJ Expressed protein OS=Oryza sativa subsp. japonica GN=Os12g0628300 PE=2 SV=Length=32 FN2676-S Chr1 6598806 A-T 0 0 Single Base Substitution 0 INTRON Hetero FN2676-S Chr1 22938190 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr1 23033690 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr1 25952617 C-T 0 0 Single Base Substitution 0 INTRON Homo FN2676-S Chr1 26623922 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr2 18086970 T-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr2 18375598 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr2 25559953 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr3 1149551 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr3 3165122 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr3 7780621 T-A 0 0 Single Base Substitution 0 INTRON Hetero FN2676-S Chr3 10840410 C-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr3 11662806 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr3 20975069 C-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr3 21082430 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr3 35695586 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN2676-S Chr4 7538114 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr4 8196897 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr4 13027834 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr4 16381128 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr4 16614189 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr4 18454625 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr4 21747117 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr4 23832420 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2676-S Chr4 33992293 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr4 36929401 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr5 1811486 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr5 5511741 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr5 10924157 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr5 11144998 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr6 3920931 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr6 4442849 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo OsKitaake06g061100 ORC1_ORYSJ Origin of replication complex subunit 1 OS=Oryza sativa subsp. japonica GN=ORC1 PE=2 SV=L FN2676-S Chr6 5958083 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2676-S Chr6 7717488 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr6 19207246 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN2676-S Chr6 23810917 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr6 24190873 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr6 25264081 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr6 27607116 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN2676-S Chr6 28690122 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr7 2193953 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr7 16638170 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr8 2200638 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr8 4953645 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2676-S Chr8 6087145 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr8 7699196 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr8 13971922 A-G 0 0 Single Base Substitution 0 INTRON Hetero FN2676-S Chr9 2854979 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr9 9946522 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr9 10193874 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr9 14100690 T-C 0 0 Single Base Substitution 0 INTRON Hetero FN2676-S Chr9 14405953 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr9 15984053 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr9 16672806 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Hetero FN2676-S Chr9 17717487 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr10 17125177 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN2676-S Chr11 2944612 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr11 19952104 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr11 19964539 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr11 25373258 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr11 28349382 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2676-S Chr12 9769313 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr12 13317647 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2676-S Chr12 15336877 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero