FN2727-S Chr1 4530512 4530515 0 0 Deletion 3 INTERGENIC Hetero FN2727-S Chr1 5025038 5025040 0 0 Deletion 2 INTERGENIC Hetero FN2727-S Chr1 16829015 16829020 0 0 Deletion 5 INTERGENIC Homo FN2727-S Chr1 19296983 19297001 0 0 Deletion 18 CODON_DELETION Hetero OsKitaake01g192900 SHL2_ORYSJ Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 S FN2727-S Chr1 31009744 31009745 0 0 Deletion 1 INTERGENIC Homo FN2727-S Chr1 40441480 40441492 0 0 Deletion 12 INTERGENIC Hetero FN2727-S Chr1 41069888 41069893 0 0 Deletion 5 UTR_3_PRIME Hetero FN2727-S Chr2 1863099 1863115 0 0 Deletion 16 INTERGENIC Hetero FN2727-S Chr2 8056139 8056152 0 0 Deletion 13 INTERGENIC Hetero FN2727-S Chr2 29290848 29290850 0 0 Deletion 2 INTRON Homo FN2727-S Chr3 2034283 2034284 0 0 Deletion 1 INTERGENIC Homo FN2727-S Chr3 11214882 11214887 0 0 Deletion 5 INTERGENIC Homo FN2727-S Chr3 26112488 26112493 0 0 Deletion 5 INTERGENIC Hetero FN2727-S Chr4 9646747 9646760 0 0 Deletion 13 INTERGENIC Hetero FN2727-S Chr4 19891444 19891445 0 0 Deletion 1 INTERGENIC Hetero FN2727-S Chr4 26265761 26265770 0 0 Deletion 9 UTR_3_PRIME Hetero FN2727-S Chr5 16918958 16918961 0 0 Deletion 3 INTERGENIC Homo FN2727-S Chr5 20245478 20245481 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION Homo OsKitaake05g161200 GST23_MAIZE Glutathione transferase GST 23 OS=Zea mays PE=2 SV=Length=22 FN2727-S Chr5 25234438 25234468 0 0 Deletion 30 INTERGENIC Homo FN2727-S Chr6 2232640 2232645 0 0 Deletion 5 FRAME_SHIFT Homo OsKitaake06g028800 FBD4_ARATH Putative FBD-associated F-box protein At1g61330 OS=Arabidopsis thaliana GN=At1g61330 PE=4 FN2727-S Chr6 5698794 5698796 0 0 Deletion 2 INTERGENIC Hetero FN2727-S Chr6 13487769 13487771 0 0 Deletion 2 INTERGENIC Homo FN2727-S Chr7 2580684 2580685 0 0 Deletion 1 INTERGENIC Homo FN2727-S Chr7 6241273 6241281 0 0 Deletion 8 INTERGENIC Homo FN2727-S Chr8 19200787 19200791 0 0 Deletion 4 INTERGENIC Hetero FN2727-S Chr8 20549707 20549708 0 0 Deletion 1 INTERGENIC Hetero FN2727-S Chr8 20998319 20998333 0 0 Deletion 14 INTERGENIC Hetero FN2727-S Chr8 27349819 27349820 0 0 Deletion 1 INTERGENIC Hetero FN2727-S Chr9 13287010 13287016 0 0 Deletion 6 INTERGENIC Hetero FN2727-S Chr9 19558686 19558688 0 0 Deletion 2 INTERGENIC Hetero FN2727-S Chr10 12652353 12652362 0 0 Deletion 9 INTERGENIC Hetero FN2727-S Chr11 7436862 7436868 0 0 Deletion 6 UTR_3_PRIME Hetero FN2727-S Chr11 9116792 9116794 0 0 Deletion 2 INTERGENIC Hetero FN2727-S Chr11 15301208 15301227 0 0 Deletion 19 INTERGENIC Hetero FN2727-S Chr12 11767631 11767636 0 0 Deletion 5 INTERGENIC Hetero FN2727-S Chr12 20734708 20734710 0 0 Deletion 2 INTERGENIC Hetero FN2727-S Chr1 39652502 39652502 0 0 Insertion 2 INTERGENIC Hetero FN2727-S Chr2 17175621 17175621 0 0 Insertion 2 INTERGENIC Hetero FN2727-S Chr10 19277237 19277237 0 0 Insertion 4 INTERGENIC Hetero FN2727-S Chr9 5243205 Chr1 5591838 0 Translocation 0 Hetero FN2727-S Chr9 15673582 Chr7 10195157 0 Translocation 0 Hetero FN2727-S Chr9 15673588 Chr7 10194746 0 Translocation 0 Hetero FN2727-S Chr12 13438217 13799127 0 0 Inversion 0 Homo OsKitaake12g111400 BGA15_ORYSJ Beta-galactosidase 15 OS=Oryza sativa subsp. japonica GN=Os12g0429200 PE=2 SV=Length=91 FN2727-S Chr12 13438235 13993470 0 0 Inversion 0 Homo OsKitaake12g111400 BGA15_ORYSJ Beta-galactosidase 15 OS=Oryza sativa subsp. japonica GN=Os12g0429200 PE=2 SV=Length=91 FN2727-S Chr7 5561021 5892678 0 0 Inversion 0 Homo FN2727-S Chr7 5561033 5892691 0 0 Inversion 0 Homo FN2727-S Chr1 42610001 42632000 0 0 Deletion 21999 OsKitaake01g469200 E13B_MAIZE Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=Length=33 FN2727-S Chr1 42610001 42632000 0 0 Deletion 21999 OsKitaake01g469300 E13B_HORVU Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=Length=33 FN2727-S Chr1 42610001 42632000 0 0 Deletion 21999 OsKitaake01g469400 E13B_HORVU Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=Length=33 FN2727-S Chr1 42610001 42632000 0 0 Deletion 21999 OsKitaake01g469500 E13E_HORVU Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vulgare PE=2 SV=Length=31 FN2727-S Chr1 42610001 42632000 0 0 Deletion 21999 OsKitaake01g469600 RECAM_ARATH DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana GN=At3g10140 PE FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g192400 PMI1_ARATH Protein PLASTID MOVEMENT IMPAIRED 1 OS=Arabidopsis thaliana GN=PMI1 PE=1 SV=Length=84 FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g192500 MPCP1_ARATH Mitochondrial phosphate carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=MPT1 FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g192600 ATL80_ARATH RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=Length=19 FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g192700 PILS7_ARATH Protein PIN-LIKES 7 OS=Arabidopsis thaliana GN=PILS7 PE=2 SV=Length=39 FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g192766 A0A0E0INF7_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=38 FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g192832 PILS7_ARATH Protein PIN-LIKES 7 OS=Arabidopsis thaliana GN=PILS7 PE=2 SV=Length=39 FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g192900 PILS7_ARATH Protein PIN-LIKES 7 OS=Arabidopsis thaliana GN=PILS7 PE=2 SV=Length=39 FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g193000 SOT5_ARATH Cytosolic sulfotransferase 5 OS=Arabidopsis thaliana GN=SOT5 PE=1 SV=Length=32 FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g193100 NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana GN=NRPD1 PE=1 SV=Length FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g193300 FK117_ARATH F-box/kelch-repeat protein At5g42350 OS=Arabidopsis thaliana GN=At5g42350 PE=2 SV=Length FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g193400 PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thal FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g193500 A0A0N7KR89_ORYSJ Os09g0555450 protein OS=Oryza sativa subsp. japonica GN=Os09g0555450 PE=4 SV=Length FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g193400 PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thal FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g193500 A0A0N7KR89_ORYSJ Os09g0555450 protein OS=Oryza sativa subsp. japonica GN=Os09g0555450 PE=4 SV=Length FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g193600 PSY_ONCHC Phytoene synthase, chloroplastic OS=Oncidium hybrid cultivar GN=PSY PE=2 SV=Length=41 FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g193700 ARC3_ARATH Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 OS=Arabidopsis thaliana GN=ARC3 PE FN2727-S Chr9 21765001 21881000 0 0 Deletion 115999 OsKitaake09g193800 IDD5_ARATH Protein indeterminate-domain 5, chloroplastic OS=Arabidopsis thaliana GN=IDD5 PE=1 SV=Len FN2727-S Chr12 13799001 13993000 0 0 Deletion 193999 OsKitaake12g113400 Hypothetical protein FN2727-S Chr12 13799001 13993000 0 0 Deletion 193999 OsKitaake12g113500 Hypothetical protein FN2727-S Chr12 13799001 13993000 0 0 Deletion 193999 OsKitaake12g113600 Hypothetical protein FN2727-S Chr12 13799001 13993000 0 0 Deletion 193999 OsKitaake12g113650 Hypothetical protein FN2727-S Chr12 13799001 13993000 0 0 Deletion 193999 OsKitaake12g113700 Hypothetical protein FN2727-S Chr12 13799001 13993000 0 0 Deletion 193999 OsKitaake12g113800 Hypothetical protein FN2727-S Chr12 13799001 13993000 0 0 Deletion 193999 OsKitaake12g113900 A0A0P0Y9Z8_ORYSJ Os12g0435000 protein OS=Oryza sativa subsp. japonica GN=Os12g0435000 PE=4 SV=Length FN2727-S Chr12 13799001 13993000 0 0 Deletion 193999 OsKitaake12g114000 Hypothetical protein FN2727-S Chr12 13799001 13993000 0 0 Deletion 193999 OsKitaake12g114100 NCED2_ORYSJ 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Oryza sativa subsp. japonica G FN2727-S Chr12 13799001 13993000 0 0 Deletion 193999 OsKitaake12g114200 FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=Length=78 FN2727-S Chr1 19376271 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr1 26015206 G-C 0 0 Single Base Substitution 0 INTRON Hetero FN2727-S Chr1 31403640 A-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr1 32848994 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr2 11814254 C-T 0 0 Single Base Substitution 0 INTRON Homo FN2727-S Chr2 17056031 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr2 20676107 T-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr2 21163856 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr2 33222813 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr3 3714208 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr3 11205491 G-A 0 0 Single Base Substitution 0 INTRON Homo FN2727-S Chr3 21797066 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN2727-S Chr3 23279747 G-T 0 0 Single Base Substitution 0 UTR_5_PRIME Hetero FN2727-S Chr3 26768141 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr3 26896128 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr4 7171377 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr4 9224812 C-T 0 0 Single Base Substitution 0 STOP_GAINED Hetero OsKitaake04g047400 Y1133_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 OS=Arabidopsis t FN2727-S Chr4 9224813 C-T 0 0 Single Base Substitution 0 STOP_GAINED Hetero OsKitaake04g047400 Y1133_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 OS=Arabidopsis t FN2727-S Chr4 10630876 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr4 12925721 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr4 17514397 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr4 28746438 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake04g215500 TMKL1_ARATH Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=Length=67 FN2727-S Chr4 34578258 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr5 3447422 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr5 17170014 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr5 28984583 C-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr6 10860678 C-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr6 12622228 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr6 25089372 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr7 16055012 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr7 26245679 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr8 1210898 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN2727-S Chr9 7279361 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr9 11904580 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr9 18368737 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake09g143300 U88B1_STERE UDP-glycosyltransferase 88B1 OS=Stevia rebaudiana GN=UGT88B1 PE=2 SV=Length=46 FN2727-S Chr10 6809895 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr10 17014229 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr11 7346993 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr11 8516073 T-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr11 16382412 A-G 0 0 Single Base Substitution 0 INTRON Homo FN2727-S Chr12 7812953 C-T 0 0 Single Base Substitution 0 INTRON Homo FN2727-S Chr12 9001127 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr12 12892410 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN2727-S Chr12 19958769 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN2727-S Chr12 25094760 C-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Hetero FN2727-S Chr12 26135063 T-G 0 0 Single Base Substitution 0 INTERGENIC Hetero