FN3039-S Chr1 8053053 8053086 0 0 Deletion 33 STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION Homo FN3039-S Chr2 11234348 11234349 0 0 Deletion 1 INTERGENIC Hetero FN3039-S Chr2 11582621 11582626 0 0 Deletion 5 INTERGENIC Hetero FN3039-S Chr2 31380104 31380105 0 0 Deletion 1 INTERGENIC Homo FN3039-S Chr3 25154289 25154291 0 0 Deletion 2 INTERGENIC Hetero FN3039-S Chr4 16745508 16745512 0 0 Deletion 4 INTERGENIC Homo FN3039-S Chr5 2155954 2155955 0 0 Deletion 1 INTRON Hetero FN3039-S Chr5 17236906 17236907 0 0 Deletion 1 INTERGENIC Homo FN3039-S Chr6 21344377 21344382 0 0 Deletion 5 INTERGENIC Hetero FN3039-S Chr7 12682407 12682411 0 0 Deletion 4 INTERGENIC Hetero FN3039-S Chr2 7907584 7907584 0 0 Insertion 2 INTERGENIC Hetero FN3039-S Chr3 17748028 17748028 0 0 Insertion 3 INTERGENIC Hetero FN3039-S Chr4 3416809 3416809 0 0 Insertion 2 INTERGENIC Hetero FN3039-S Chr7 21976534 21976534 0 0 Insertion 2 INTERGENIC Hetero FN3039-S Chr8 26682322 26682322 0 0 Insertion 3 INTERGENIC Hetero FN3039-S Chr8 19368470 19368472 0 0 Deletion 2 Hetero 0 FN3039-S Chr9 15554838 15554935 0 0 Deletion 97 Hetero 0 FN3039-S Chr12 10853863 10853863 0 0 Insertion 4 Hetero 0 FN3039-S Chr11 18542947 Chr5 24885827 0 Translocation 0 Hetero OsKitaake05g217400 SCAM3_ORYSJ Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP FN3039-S Chr11 18543629 Chr5 24885844 0 Translocation 0 Hetero OsKitaake05g217400 SCAM3_ORYSJ Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP FN3039-S Chr6 12344346 Chr5 116941 0 Translocation 0 Hetero FN3039-S Chr12 24946935 Chr10 7457216 0 Translocation 0 Hetero FN3039-S Chr5 5225977 5944592 0 0 Inversion 0 Hetero OsKitaake05g058500 UBC2_WHEAT Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=Length=15 FN3039-S Chr5 5254891 5944599 0 0 Inversion 0 Hetero FN3039-S Chr11 25682805 25973996 0 0 Inversion 0 Hetero FN3039-S Chr11 25682808 25974007 0 0 Inversion 0 Hetero FN3039-S Chr5 5220001 5258000 0 0 Deletion 37999 OsKitaake05g058500 UBC2_WHEAT Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=Length=15 FN3039-S Chr5 5220001 5258000 0 0 Deletion 37999 OsKitaake05g058600 SSP1B_ORYSJ FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica GN=SSRP1-B PE=2 SV=Length=6 FN3039-S Chr5 5220001 5258000 0 0 Deletion 37999 OsKitaake05g058700 A0A0D9ZUZ8_9ORYZ Uncharacterized protein OS=Oryza glumipatula PE=4 SV=Length=28 FN3039-S Chr5 5220001 5258000 0 0 Deletion 37999 OsKitaake05g058800 SYQ_LUPLU Glutamine--tRNA ligase OS=Lupinus luteus PE=2 SV=Length=79 FN3039-S Chr5 5220001 5258000 0 0 Deletion 37999 OsKitaake05g058900 B8AYV3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_18729 PE=4 SV=Len FN3039-S Chr6 30028001 30034000 0 0 Deletion 5999 OsKitaake06g281100 AMY2A_ORYSJ Alpha-amylase isozyme 2A OS=Oryza sativa subsp. japonica GN=AMY2A PE=2 SV=Length=44 FN3039-S Chr6 30028001 30034000 0 0 Deletion 5999 OsKitaake06g281200 A0A0D3GKS8_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=20 FN3039-S Chr1 12113672 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr1 19065213 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr2 17411821 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr2 21779698 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr3 19194386 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr3 22837251 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr4 218611 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN3039-S Chr4 2464666 T-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN3039-S Chr4 10570125 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3039-S Chr5 141265 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr5 141269 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr5 6153711 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr5 6374383 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr6 4574591 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr6 14628202 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr6 15136596 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr6 18913281 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3039-S Chr6 21862405 G-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3039-S Chr7 19406837 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr8 8643888 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr8 15991030 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr8 28765931 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake08g247300 ADPRM_ORYSJ Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Oryza sativa subsp. japonica FN3039-S Chr9 1046084 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr9 1179712 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr9 3987078 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr9 9387462 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3039-S Chr9 15573674 A-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3039-S Chr10 4508849 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr10 4986664 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr11 4183409 G-A 0 0 Single Base Substitution 0 INTRON Homo FN3039-S Chr11 18437926 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3039-S Chr12 7071630 T-A 0 0 Single Base Substitution 0 INTRON Hetero FN3039-S Chr12 26751823 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero