FN3390-S Chr2 18402626 18402628 0 0 Deletion 2 INTERGENIC Hetero FN3390-S Chr4 14622193 14622194 0 0 Deletion 1 INTRON Homo FN3390-S Chr8 5825669 5825670 0 0 Deletion 1 INTERGENIC Homo FN3390-S Chr8 6656926 6656931 0 0 Deletion 5 INTERGENIC Homo FN3390-S Chr10 10597216 10597218 0 0 Deletion 2 FRAME_SHIFT Homo OsKitaake10g062800 BGA14_ORYSJ Beta-galactosidase 14 OS=Oryza sativa subsp. japonica GN=Os10g0340600 PE=2 SV=Length=80 FN3390-S Chr3 4007927 4007927 0 0 Insertion 2 INTERGENIC Hetero FN3390-S Chr12 887378 887378 0 0 Insertion 2 UTR_5_PRIME Hetero FN3390-S Chr12 18823179 18823179 0 0 Insertion 3 INTERGENIC Hetero FN3390-S Chr11 1140924 Chr9 14183581 0 Translocation 0 Hetero OsKitaake09g095300 HIP9_ARATH Heavy metal-associated isoprenylated plant protein 9 OS=Arabidopsis thaliana GN=HIPP09 PE FN3390-S Chr10 13161154 Chr4 9662369 0 Translocation 0 Hetero FN3390-S Chr11 1141101 Chr9 14701189 0 Translocation 0 Hetero FN3390-S Chr1 6304417 7005611 0 0 Inversion 0 Homo OsKitaake01g087900 BAC2_ARATH Mitochondrial arginine transporter BAC2 OS=Arabidopsis thaliana GN=BAC2 PE=1 SV=Length=29 FN3390-S Chr1 6304420 7005618 0 0 Inversion 0 Homo OsKitaake01g087900 BAC2_ARATH Mitochondrial arginine transporter BAC2 OS=Arabidopsis thaliana GN=BAC2 PE=1 SV=Length=29 FN3390-S Chr11 1140917 1143372 0 0 Inversion 0 Homo FN3390-S Chr11 1141110 1143380 0 0 Inversion 0 Homo FN3390-S Chr9 14184001 14231000 0 0 Deletion 46999 OsKitaake09g095300 HIP9_ARATH Heavy metal-associated isoprenylated plant protein 9 OS=Arabidopsis thaliana GN=HIPP09 PE FN3390-S Chr9 14184001 14231000 0 0 Deletion 46999 OsKitaake09g095400 ODP24_ARATH Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase comp FN3390-S Chr9 14184001 14231000 0 0 Deletion 46999 OsKitaake09g095500 CRK12_ARATH Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana GN=CRK12 FN3390-S Chr9 14184001 14231000 0 0 Deletion 46999 OsKitaake09g095600 A2Z156_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_31328 PE=4 SV=Len FN3390-S Chr9 14184001 14231000 0 0 Deletion 46999 OsKitaake09g095700 A0A0D3H6S2_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=12 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g095800 TAF2_ARATH Transcription initiation factor TFIID subunit 2 OS=Arabidopsis thaliana GN=TAF2 PE=2 SV=L FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g095900 KN7D_ARATH Kinesin-like protein KIN-7D, mitochondrial OS=Arabidopsis thaliana GN=KIN7D PE=2 SV=Lengt FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g096000 TCP18_ARATH Transcription factor TCP18 OS=Arabidopsis thaliana GN=TCP18 PE=2 SV=Length=43 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g096100 BH030_ARATH Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1 SV=Length=36 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g096200 C5XC84_SORBI Uncharacterized protein OS=Sorghum bicolor GN=SORBI_3002G198700 PE=4 SV=Length=25 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g096300 PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E4 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g096200 C5XC84_SORBI Uncharacterized protein OS=Sorghum bicolor GN=SORBI_3002G198700 PE=4 SV=Length=25 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g096300 PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E4 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g096200 C5XC84_SORBI Uncharacterized protein OS=Sorghum bicolor GN=SORBI_3002G198700 PE=4 SV=Length=25 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g096300 PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E4 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g096400 RBCMT_ARATH [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic OS=Arabidopsi FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g096500 PIN4_XENTR Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Xenopus tropicalis GN=pin4 PE=2 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g096600 NAC79_ARATH NAC domain-containing protein 79 OS=Arabidopsis thaliana GN=NAC079 PE=2 SV=Length=32 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g096900 Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=Length=51 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097000 CML30_ARATH Probable calcium-binding protein CML30 OS=Arabidopsis thaliana GN=CML30 PE=2 SV=Length=1 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097100 A0A0D3H6T7_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=8 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097200 A0A0E0QRC5_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=10 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097300 PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN=PCMP-E4 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097400 SUD1_ARATH Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana GN=SUD1 PE=1 SV=Length=110 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097500 TRIP4_MOUSE Activating signal cointegrator 1 OS=Mus musculus GN=Trip4 PE=1 SV=Length=58 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097600 YDIL_BACSU Putative membrane peptidase YdiL OS=Bacillus subtilis (strain 168) GN=ydiL PE=3 SV=Length FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097500 TRIP4_MOUSE Activating signal cointegrator 1 OS=Mus musculus GN=Trip4 PE=1 SV=Length=58 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097600 YDIL_BACSU Putative membrane peptidase YdiL OS=Bacillus subtilis (strain 168) GN=ydiL PE=3 SV=Length FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097700 PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thal FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097600 YDIL_BACSU Putative membrane peptidase YdiL OS=Bacillus subtilis (strain 168) GN=ydiL PE=3 SV=Length FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097700 PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thal FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097800 RL34_TOBAC 60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=Length=12 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097900 Q6ES34_ORYSJ Os09g0413600 protein OS=Oryza sativa subsp. japonica GN=P0643D11.22-1 PE=4 SV=Length=11 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g097950 Hypothetical protein FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g098000 A3BYT1_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_29351 PE=4 SV=Length=37 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g098200 MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=Length=31 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g098300 KN14G_ORYSJ Kinesin-like protein KIN-14G OS=Oryza sativa subsp. japonica GN=KIN14G PE=2 SV=Length=72 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g098350 Hypothetical protein FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g098400 MIF3_ORYSJ Mini zinc finger protein 2 OS=Oryza sativa subsp. japonica GN=MIF3 PE=3 SV=Length=11 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g098500 Hypothetical protein FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g098600 ZHD9_ORYSJ Zinc-finger homeodomain protein 9 OS=Oryza sativa subsp. japonica GN=ZHD9 PE=3 SV=Length= FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g098700 Q6ER19_ORYSJ Putative uncharacterized protein P0707C02.10 OS=Oryza sativa subsp. japonica GN=P0707C0 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g098800 GASA6_ARATH Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=Length=10 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g098900 A0A0E0IJI8_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=28 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g099000 Q6ER14_ORYSJ Os09g0415200 protein OS=Oryza sativa subsp. japonica GN=Os09g0415200 PE=4 SV=Length=8 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g099100 C7J6G8_ORYSJ Os09g0415300 protein OS=Oryza sativa subsp. japonica GN=Os09g0415300 PE=4 SV=Length=51 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g099200 PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=2 SV=Length=61 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g099300 PFKA5_ARATH ATP-dependent 6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE= FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g099400 STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=1 SV=Length=51 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g099500 Q6EQ13_ORYSJ Os09g0416300 protein OS=Oryza sativa subsp. japonica GN=Os09g0416300 PE=4 SV=Length=26 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g099600 DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=Length=1 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g099700 Q6EQ09_ORYSJ Os09g0416600 protein OS=Oryza sativa subsp. japonica GN=P0014G10.19-1 PE=2 SV=Length=44 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g099750 Hypothetical protein FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g099800 GOS11_ARATH Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=Length=2 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g099850 Hypothetical protein FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g099900 CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=Le FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g100000 Hypothetical protein FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g099900 CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=Le FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g100100 PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=Length=62 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g100200 Hypothetical protein FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g100300 BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=Length=35 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g100400 PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana GN=At5g614 FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g100500 WRK76_ORYSI WRKY transcription factor WRKY76 OS=Oryza sativa subsp. indica GN=WRKY76 PE=2 SV=Length= FN3390-S Chr9 14238001 14697000 0 0 Deletion 458999 OsKitaake09g100600 WRK62_ORYSJ WRKY transcription factor WRKY62 OS=Oryza sativa subsp. japonica GN=WRKY62 PE=1 SV=Lengt FN3390-S Chr9 14730001 14758000 0 0 Deletion 27999 OsKitaake09g100800 CIPKR_ORYSJ Putative CBL-interacting protein kinase 27 OS=Oryza sativa subsp. japonica GN=CIPK27 PE= FN3390-S Chr9 14730001 14758000 0 0 Deletion 27999 OsKitaake09g100900 A0A0E0IJM0_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=9 FN3390-S Chr9 14989001 15030000 0 0 Deletion 40999 OsKitaake09g103700 Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS= FN3390-S Chr9 14989001 15030000 0 0 Deletion 40999 OsKitaake09g103800 PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thal FN3390-S Chr9 14989001 15030000 0 0 Deletion 40999 OsKitaake09g103900 FBT6_ARATH Probable folate-biopterin transporter 6 OS=Arabidopsis thaliana GN=At5g10820 PE=2 SV=Leng FN3390-S Chr1 6216811 C-A 0 0 Single Base Substitution 0 INTRON Homo FN3390-S Chr1 38772311 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr2 6980480 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr2 22228174 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake02g215500 C71Z6_ORYSJ Ent-isokaurene C2-hydroxylase OS=Oryza sativa subsp. japonica GN=CYP71Z6 PE=1 SV=Length= FN3390-S Chr2 28255013 G-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3390-S Chr2 35822861 G-A 0 0 Single Base Substitution 0 INTRON Hetero FN3390-S Chr3 5325302 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr3 14208330 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr3 25697248 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo OsKitaake03g271100 CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=3 SV= FN3390-S Chr4 10840769 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3390-S Chr4 21792622 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr5 14359220 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr5 18749209 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr5 26502400 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr6 1713849 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr6 4892223 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr6 8274416 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr6 8634428 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr6 18650005 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr8 8581098 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3390-S Chr8 17441474 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr8 19042216 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr9 833636 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr10 20493283 G-A 0 0 Single Base Substitution 0 INTRON Hetero FN3390-S Chr10 20493285 G-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION Hetero FN3390-S Chr11 5353470 C-T 0 0 Single Base Substitution 0 INTRON Homo FN3390-S Chr11 6307114 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr11 6385780 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr11 18827370 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3390-S Chr11 21095637 T-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3390-S Chr11 23540493 C-G 0 0 Single Base Substitution 0 INTERGENIC Homo