FN3393-S Chr1 254115 254130 0 0 Deletion 15 INTERGENIC Homo FN3393-S Chr2 6807659 6807660 0 0 Deletion 1 INTERGENIC Homo FN3393-S Chr2 17621037 17621041 0 0 Deletion 4 INTERGENIC Homo FN3393-S Chr3 704357 704358 0 0 Deletion 1 INTERGENIC Hetero FN3393-S Chr4 9589790 9589793 0 0 Deletion 3 INTERGENIC Hetero FN3393-S Chr4 21451897 21451898 0 0 Deletion 1 INTERGENIC Hetero FN3393-S Chr6 4562980 4562984 0 0 Deletion 4 INTERGENIC Homo FN3393-S Chr6 21893097 21893102 0 0 Deletion 5 INTERGENIC Hetero FN3393-S Chr10 12475509 12475531 0 0 Deletion 22 INTERGENIC Homo FN3393-S Chr11 11944851 11944861 0 0 Deletion 10 INTERGENIC Hetero FN3393-S Chr12 2781723 2781725 0 0 Deletion 2 INTERGENIC Hetero FN3393-S Chr12 17483255 17483257 0 0 Deletion 2 INTERGENIC Hetero FN3393-S Chr3 25610951 25610951 0 0 Insertion 2 INTERGENIC Hetero FN3393-S Chr9 19058001 19081000 0 0 Deletion 22999 OsKitaake09g152900 A0A0E0QTA8_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=12 FN3393-S Chr9 19058001 19081000 0 0 Deletion 22999 OsKitaake09g153000 YL728_MIMIV Uncharacterized protein L728 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L728 PE=4 SV=Le FN3393-S Chr9 19058001 19081000 0 0 Deletion 22999 OsKitaake09g153100 YL728_MIMIV Uncharacterized protein L728 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L728 PE=4 SV=Le FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g153300 Q0J0S9_ORYSJ Os09g0500100 protein OS=Oryza sativa subsp. japonica GN=Os09g0500100 PE=4 SV=Length=37 FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g153400 MIMIT_BOVIN Mimitin, mitochondrial OS=Bos taurus GN=NDUFAF2 PE=2 SV=Length=16 FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g153500 IP5PC_ARATH Type I inositol polyphosphate 5-phosphatase 12 OS=Arabidopsis thaliana GN=IP5P12 PE=1 SV FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g153600 TOP3B_ORYSJ DNA topoisomerase 3-beta OS=Oryza sativa subsp. japonica GN=TOP3B PE=2 SV=Length=86 FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g153700 B561C_ARATH Cytochrome b561 and DOMON domain-containing protein At3g25290 OS=Arabidopsis thaliana GN FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g153800 AIR12_ARATH Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=Lengt FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g153900 RL321_ARATH 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=Length=13 FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g154000 BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=Length=45 FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g154050 A0A0D3H8K3_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=7 FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g154100 RL321_ARATH 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=Length=13 FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g154200 FK151_ARATH Peptidyl-prolyl cis-trans isomerase FKBP15-1 OS=Arabidopsis thaliana GN=FKBP15-1 PE=2 SV FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g154300 RL321_ARATH 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=Length=13 FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g154400 H2B9Y0_ORYSJ VWA domain containing protein OS=Oryza sativa subsp. japonica GN=LGD1 PE=2 SV=Length=91 FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g154500 EA6_ARATH Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=Length= FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g154550 Hypothetical protein FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g154600 QORH_ARATH Chloroplast envelope quinone oxidoreductase homolog OS=Arabidopsis thaliana GN=CEQORH PE= FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g154700 FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=Lengt FN3393-S Chr9 19110001 19212000 0 0 Deletion 101999 OsKitaake09g154750 A0A0P0XPZ4_ORYSJ Os09g0502700 protein OS=Oryza sativa subsp. japonica GN=Os09g0502700 PE=4 SV=Length FN3393-S Chr1 4891078 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr1 8980910 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr1 17611371 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3393-S Chr1 17772426 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake01g180800 RR3_ORYSJ 30S ribosomal protein S3, chloroplastic OS=Oryza sativa subsp. japonica GN=rps3 PE=3 SV=Le FN3393-S Chr1 43018476 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr2 9055433 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN3393-S Chr2 14183543 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr2 23397402 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME Hetero FN3393-S Chr3 12218492 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr3 14322804 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr3 20179677 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3393-S Chr3 28168178 T-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr4 1852530 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr4 14913783 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr5 5835231 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr5 10300208 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr5 24714383 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr6 3471250 G-A 0 0 Single Base Substitution 0 INTRON Hetero FN3393-S Chr6 17856342 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr6 21958671 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr7 1073458 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr7 2540251 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr8 7057624 T-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr8 16736202 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr8 17557991 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3393-S Chr8 19751733 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr9 1632084 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3393-S Chr9 2122474 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3393-S Chr9 6697278 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr9 8851245 G-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3393-S Chr10 5111608 A-G 0 0 Single Base Substitution 0 INTRON Homo FN3393-S Chr10 19144567 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr11 14660479 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr11 19106598 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3393-S Chr11 19106599 T-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN3393-S Chr12 5902526 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr12 5902527 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr12 8539890 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr12 12719396 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr12 14273377 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr12 17095141 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3393-S Chr12 24982314 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero