FN3412-S Chr1 41475614 41475616 0 0 Deletion 2 INTERGENIC Hetero FN3412-S Chr3 12247248 12247249 0 0 Deletion 1 INTERGENIC Hetero FN3412-S Chr3 21767970 21767976 0 0 Deletion 6 INTERGENIC Homo FN3412-S Chr3 34871785 34871796 0 0 Deletion 11 INTERGENIC Homo FN3412-S Chr3 37452110 37452111 0 0 Deletion 1 INTERGENIC Homo FN3412-S Chr4 9393085 9393087 0 0 Deletion 2 INTERGENIC Hetero FN3412-S Chr5 1108331 1108345 0 0 Deletion 14 SPLICE_SITE_ACCEPTOR Hetero OsKitaake05g014000 NFRKB_MOUSE Nuclear factor related to kappa-B-binding protein OS=Mus musculus GN=Nfrkb PE=1 SV=Lengt FN3412-S Chr5 9206911 9206912 0 0 Deletion 1 INTERGENIC Hetero FN3412-S Chr5 12319027 12319029 0 0 Deletion 2 INTERGENIC Hetero FN3412-S Chr5 18526012 18526026 0 0 Deletion 14 INTRON Hetero FN3412-S Chr5 29723731 29723744 0 0 Deletion 13 INTERGENIC Hetero FN3412-S Chr6 20953665 20953666 0 0 Deletion 1 INTERGENIC Hetero FN3412-S Chr11 6121925 6121930 0 0 Deletion 5 INTERGENIC Hetero FN3412-S Chr1 30981330 30981330 0 0 Insertion 2 INTRON Hetero FN3412-S Chr2 33561235 33561235 0 0 Insertion 2 INTERGENIC Hetero FN3412-S Chr2 35912871 35912871 0 0 Insertion 3 INTERGENIC Hetero FN3412-S Chr2 35361276 35361286 0 0 Deletion 10 Hetero 0 FN3412-S Chr5 30121645 30121646 0 0 Deletion 1 Hetero 0 FN3412-S Chr9 21622219 21622540 0 0 Deletion 321 Hetero 0 FN3412-S Chr9 14504393 Chr7 29587393 0 Translocation 0 Hetero OsKitaake09g098500 Hypothetical protein FN3412-S Chr9 14515470 Chr7 29587390 0 Translocation 0 Hetero OsKitaake09g098600 ZHD9_ORYSJ Zinc-finger homeodomain protein 9 OS=Oryza sativa subsp. japonica GN=ZHD9 PE=3 SV=Length= FN3412-S Chr11 14683349 Chr9 14519260 0 Translocation 0 Hetero OsKitaake09g098600 ZHD9_ORYSJ Zinc-finger homeodomain protein 9 OS=Oryza sativa subsp. japonica GN=ZHD9 PE=3 SV=Length= FN3412-S Chr11 14683533 Chr9 14515484 0 Translocation 0 Hetero OsKitaake09g098600 ZHD9_ORYSJ Zinc-finger homeodomain protein 9 OS=Oryza sativa subsp. japonica GN=ZHD9 PE=3 SV=Length= FN3412-S Chr5 1705304 2346626 0 0 Inversion 0 Hetero OsKitaake05g019600 IVD_ORYSJ Isovaleryl-CoA dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os05g012550 FN3412-S Chr5 1673010 2346634 0 0 Inversion 0 Hetero FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g194700 GL24_ORYSJ Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=Length=22 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g194800 BIC1_ARATH Protein BIC1 OS=Arabidopsis thaliana GN=BIC1 PE=1 SV=Length=14 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g194900 E1314_ARATH Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500 PE=1 SV=Length= FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g195000 Y5390_ARATH Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana GN=At5g03900 PE FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g194900 E1314_ARATH Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500 PE=1 SV=Length= FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g195000 Y5390_ARATH Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana GN=At5g03900 PE FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g195100 HBPL1_ARATH Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g195200 ATCA1_ARATH Alpha carbonic anhydrase 1, chloroplastic OS=Arabidopsis thaliana GN=ACA1 PE=1 SV=Length FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g195400 A0A0E0NFY2_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=21 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g195500 UMP2_ARATH Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana GN=At2g27730 PE= FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g195600 AGUB_ORYSJ N-carbamoylputrescine amidase OS=Oryza sativa subsp. japonica GN=CPA PE=2 SV=Length=30 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g195700 FAFL_ARATH Protein FAF-like, chloroplastic OS=Arabidopsis thaliana GN=At5g22090 PE=2 SV=Length=46 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g195800 INV1_ORYSJ Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Oryza sativa subsp. japonica GN=CIN1 PE FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g195900 PMEI8_ORYSJ Pectinesterase inhibitor 8 OS=Oryza sativa subsp. japonica GN=PMEI8 PE=2 SV=Length=18 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g196000 RS142_MAIZE 40S ribosomal protein S14 OS=Zea mays PE=3 SV=Length=15 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g196100 ORLIK_ARATH Protein ORANGE-LIKE, chloroplastic OS=Arabidopsis thaliana GN=ORLIKE PE=1 SV=Length=31 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g196200 A0A0E0NFZ2_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=20 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g196300 RAR1_ORYSJ Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp. japonic FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g196400 ELM1_ARATH Mitochondrial fission protein ELM1 OS=Arabidopsis thaliana GN=ELM1 PE=1 SV=Length=42 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g196500 FB346_ARATH F-box protein At3g44326 OS=Arabidopsis thaliana GN=At3g44326 PE=2 SV=Length=36 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g196600 Hypothetical protein FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g196700 A0A0D3F616_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=10 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g196800 FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=Lengt FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g196900 RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis elegans GN=rsp-1 PE=3 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g197000 Q6EU57_ORYSJ Os02g0536500 protein OS=Oryza sativa subsp. japonica GN=Os02g0536500 PE=2 SV=Length=12 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g197066 Q6EU56_ORYSJ Putative uncharacterized protein OJ1112_G07.33 OS=Oryza sativa subsp. japonica GN=OJ111 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g197132 A0A0E0NG05_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=12 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g197200 PMEI8_ORYSJ Pectinesterase inhibitor 8 OS=Oryza sativa subsp. japonica GN=PMEI8 PE=2 SV=Length=18 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g197300 PMEI8_ORYSJ Pectinesterase inhibitor 8 OS=Oryza sativa subsp. japonica GN=PMEI8 PE=2 SV=Length=18 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g197400 FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=Lengt FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g197500 CLPC_STAAS ATP-dependent Clp protease ATP-binding subunit ClpC OS=Staphylococcus aureus (strain MSSA FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g197600 E2FA_ARATH Transcription factor E2FA OS=Arabidopsis thaliana GN=E2FA PE=1 SV=Length=48 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g197700 BAS1_ORYSJ 2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=L FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g197800 SMXL3_ARATH Protein SMAX1-LIKE 3 OS=Arabidopsis thaliana GN=SMXL3 PE=2 SV=Length=81 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g197900 AVPX_ARATH Pyrophosphate-energized membrane proton pump 3 OS=Arabidopsis thaliana GN=AVPL2 PE=3 SV=L FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g198000 SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana GN=EMB2761 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g198050 ILA_ARATH Protein ILITYHIA OS=Arabidopsis thaliana GN=ILA PE=1 SV=Length=269 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g198100 ILA_ARATH Protein ILITYHIA OS=Arabidopsis thaliana GN=ILA PE=1 SV=Length=269 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g198200 A0A0P0VK33_ORYSJ Os02g0538400 protein OS=Oryza sativa subsp. japonica GN=Os02g0538400 PE=4 SV=Length FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g198300 NHL1_ARATH NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana GN=NHL1 PE=2 SV=Length=20 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g198400 BZP06_ORYSJ Basic leucine zipper 6 OS=Oryza sativa subsp. japonica GN=BZIP06 PE=2 SV=Length=26 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g198500 DGDG1_LOTJA Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1 PE=2 SV= FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g198600 PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=Length=41 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g198700 MKS1_ARATH Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=Length=22 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g198800 RNJ_CORGL Ribonuclease J OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / L FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g198900 YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strai FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g198950 A0A0E0NG36_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=21 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g198900 YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strai FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g198950 A0A0E0NG36_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=21 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g199000 A0A0E0NG35_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=16 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g199100 A0A1E5W365_9POAL Uncharacterized protein OS=Dichanthelium oligosanthes GN=BAE44_0007152 PE=4 SV=Leng FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g199200 PUB27_ARATH U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=Length=42 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g199301 Q6ET00_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OJ1298_H07.23 PE=4 SV=Length FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g199400 SDC1_ORYSJ Serine decarboxylase 1 OS=Oryza sativa subsp. japonica GN=SDC1 PE=3 SV=Length=48 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g199500 ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=Length=18 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g199600 QCR6_SOLTU Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=Length=6 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g199700 LLG1_ARATH GPI-anchored protein LLG1 OS=Arabidopsis thaliana GN=LLG1 PE=1 SV=Length=16 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g199800 FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=Length=78 FN3412-S Chr2 19989001 20544000 0 0 Deletion 554999 OsKitaake02g199900 A0A0D3F650_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=41 FN3412-S Chr1 7631128 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3412-S Chr1 33428538 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr2 1779460 T-C 0 0 Single Base Substitution 0 INTRON Hetero FN3412-S Chr2 5381178 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr2 9181910 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr2 10567694 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr2 15483212 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr2 19690772 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr2 22226691 C-T 0 0 Single Base Substitution 0 INTRON Hetero FN3412-S Chr3 10300469 G-A 0 0 Single Base Substitution 0 INTRON Hetero FN3412-S Chr3 29880130 C-T 0 0 Single Base Substitution 0 INTRON Hetero FN3412-S Chr4 9073048 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr4 32383404 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr4 33672507 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake04g279300 A0A0E0PEN3_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=19 FN3412-S Chr5 5303554 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr5 6311602 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr5 8859414 C-T 0 0 Single Base Substitution 0 INTRON Hetero FN3412-S Chr5 8859423 G-T 0 0 Single Base Substitution 0 INTRON Hetero FN3412-S Chr5 11476806 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr6 5227018 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3412-S Chr6 6682458 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3412-S Chr6 15853261 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr6 26489494 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr6 28153734 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr8 13082995 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr8 15276923 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake08g119200 GRTP1_XENLA Growth hormone-regulated TBC protein 1 OS=Xenopus laevis GN=grtp1 PE=2 SV=Length=34 FN3412-S Chr8 26608164 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr8 28917268 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr9 7312255 C-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr9 11637867 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3412-S Chr9 11637868 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3412-S Chr10 3106132 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr11 4216039 C-T 0 0 Single Base Substitution 0 INTRON Hetero FN3412-S Chr11 12656638 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr11 13417713 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3412-S Chr11 16835459 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr12 2414632 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr12 15928895 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3412-S Chr12 18455134 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero