FN3417-S Chr1 8612783 8612784 0 0 Deletion 1 INTERGENIC Hetero FN3417-S Chr2 3602601 3602602 0 0 Deletion 1 INTRON Hetero FN3417-S Chr2 18402626 18402628 0 0 Deletion 2 INTERGENIC Hetero FN3417-S Chr3 6563494 6563498 0 0 Deletion 4 INTERGENIC Hetero FN3417-S Chr3 11405568 11405570 0 0 Deletion 2 INTERGENIC Hetero FN3417-S Chr4 15068270 15068272 0 0 Deletion 2 INTERGENIC Homo FN3417-S Chr4 23534380 23534392 0 0 Deletion 12 CODON_DELETION Hetero OsKitaake04g147100 AP37_ORYSJ Aspartyl protease 37 OS=Oryza sativa subsp. japonica GN=AP37 PE=3 SV=Length=46 FN3417-S Chr5 2969466 2969471 0 0 Deletion 5 INTERGENIC Hetero FN3417-S Chr6 11901289 11901293 0 0 Deletion 4 UTR_3_PRIME Hetero FN3417-S Chr8 18209745 18209746 0 0 Deletion 1 INTERGENIC Hetero FN3417-S Chr9 14363800 14363801 0 0 Deletion 1 INTRON Hetero FN3417-S Chr10 10301287 10301288 0 0 Deletion 1 INTERGENIC Hetero FN3417-S Chr3 31561895 31561895 0 0 Insertion 4 INTERGENIC Hetero FN3417-S Chr2 29292738 29292738 0 0 Insertion 2 Hetero OsKitaake02g294500 AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=Length=127 FN3417-S Chr6 26120145 Chr2 3826304 0 Translocation 0 Hetero OsKitaake02g055200 AGO17_ORYSJ Protein argonaute 17 OS=Oryza sativa subsp. japonica GN=AGO17 PE=2 SV=Length=87 FN3417-S Chr3 19894761 Chr2 37127324 0 Translocation 0 Hetero FN3417-S Chr3 19895683 Chr2 37127340 0 Translocation 0 Hetero FN3417-S Chr6 27467863 Chr5 17654556 0 Translocation 0 Hetero FN3417-S Chr4 27226610 27270305 0 0 Inversion 0 Homo OsKitaake04g198500 ARFJ_ORYSJ Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=Length=69 FN3417-S Chr4 27226639 27270308 0 0 Inversion 0 Homo OsKitaake04g198500 ARFJ_ORYSJ Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=Length=69 FN3417-S Chr5 17293937 17294804 0 0 Inversion 0 Hetero FN3417-S Chr5 17293941 17294810 0 0 Inversion 0 Hetero FN3417-S Chr6 26119471 26705239 0 0 Inversion 0 Hetero FN3417-S Chr6 26120155 26705244 0 0 Inversion 0 Hetero FN3417-S Chr1 5558001 5593000 0 0 Deletion 34999 OsKitaake01g071500 MT3A_ORYSJ Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=Length=6 FN3417-S Chr1 5558001 5593000 0 0 Deletion 34999 OsKitaake01g071600 Y1960_ARATH Probable serine/threonine-protein kinase At1g09600 OS=Arabidopsis thaliana GN=At1g09600 FN3417-S Chr1 20937452 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr1 34545991 A-G 0 0 Single Base Substitution 0 START_GAINED Homo FN3417-S Chr1 42269693 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Homo FN3417-S Chr2 22183023 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3417-S Chr2 26471740 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr2 28255013 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr2 29866247 G-C 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN3417-S Chr3 767498 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr3 7566539 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr3 14208330 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3417-S Chr4 9407263 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN3417-S Chr4 22076927 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr5 453809 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3417-S Chr5 16900862 T-A 0 0 Single Base Substitution 0 UTR_5_PRIME Hetero FN3417-S Chr6 13162184 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr6 23194509 C-T 0 0 Single Base Substitution 0 INTRON Hetero FN3417-S Chr6 26451038 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr6 29253376 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake06g270900 USP_ORYSJ UDP-sugar pyrophosphorylase OS=Oryza sativa subsp. japonica GN=USP PE=2 SV=Length=61 FN3417-S Chr7 11474501 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr7 15296858 T-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr8 6571365 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3417-S Chr8 18856638 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr9 15859530 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr10 13110689 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr10 13110691 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr11 6911880 G-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3417-S Chr11 13635395 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3417-S Chr11 14291272 T-C 0 0 Single Base Substitution 0 INTRON Homo FN3417-S Chr12 11829482 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN3417-S Chr12 22566887 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3417-S Chr12 26057786 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero