FN3490-S Chr1 6171372 6171373 0 0 Deletion 1 INTERGENIC Homo FN3490-S Chr1 19296698 19296708 0 0 Deletion 10 FRAME_SHIFT Hetero OsKitaake01g192900 SHL2_ORYSJ Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 S FN3490-S Chr1 34767123 34767127 0 0 Deletion 4 UTR_3_PRIME Hetero FN3490-S Chr1 39201331 39201340 0 0 Deletion 9 INTRON Hetero FN3490-S Chr2 29925745 29925752 0 0 Deletion 7 INTRON Hetero FN3490-S Chr2 33887209 33887217 0 0 Deletion 8 INTRON Homo FN3490-S Chr3 25804897 25804898 0 0 Deletion 1 INTERGENIC Homo FN3490-S Chr4 36220392 36220393 0 0 Deletion 1 UTR_3_PRIME Hetero FN3490-S Chr6 1308689 1308707 0 0 Deletion 18 INTERGENIC Homo FN3490-S Chr7 3364831 3364832 0 0 Deletion 1 INTERGENIC Hetero FN3490-S Chr8 14133313 14133323 0 0 Deletion 10 UTR_3_PRIME Hetero FN3490-S Chr9 18911248 18911251 0 0 Deletion 3 INTERGENIC Homo FN3490-S Chr10 600370 600378 0 0 Deletion 8 INTERGENIC Hetero FN3490-S Chr11 4913625 4913630 0 0 Deletion 5 INTERGENIC Hetero FN3490-S Chr2 17705693 17705693 0 0 Insertion 6 INTERGENIC Hetero FN3490-S Chr4 15258607 15258607 0 0 Insertion 2 INTERGENIC Hetero FN3490-S Chr12 23253486 23253486 0 0 Insertion 2 INTERGENIC Hetero FN3490-S Chr1 9692959 9692959 0 0 Insertion 1 Hetero 0 FN3490-S Chr6 24685799 Chr5 27677116 0 Translocation 0 Hetero OsKitaake06g219100 CCR2_ARATH Cinnamoyl-CoA reductase 2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=Length=33 FN3490-S Chr2 4085276 Chr1 26206768 0 Translocation 0 Hetero OsKitaake01g255600 FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 S FN3490-S Chr2 4215580 Chr1 26197441 0 Translocation 0 Hetero FN3490-S Chr6 25553643 Chr5 27673917 0 Translocation 0 Hetero FN3490-S Chr6 24685769 25553635 0 0 Inversion 0 Homo OsKitaake06g219100 CCR2_ARATH Cinnamoyl-CoA reductase 2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=Length=33 FN3490-S Chr12 12435045 12563363 0 0 Inversion 0 Hetero FN3490-S Chr12 12437379 12563368 0 0 Inversion 0 Hetero FN3490-S Chr1 26206001 26228000 0 0 Deletion 21999 OsKitaake01g255600 FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 S FN3490-S Chr1 26206001 26228000 0 0 Deletion 21999 OsKitaake01g255650 A0A0D3ERN1_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=11 FN3490-S Chr1 26232001 26297000 0 0 Deletion 64999 OsKitaake01g255700 PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=Length=47 FN3490-S Chr1 26232001 26297000 0 0 Deletion 64999 OsKitaake01g255800 DEF1B_ORYSJ Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp. japonica GN=PDF1B PE=2 SV=L FN3490-S Chr1 26232001 26297000 0 0 Deletion 64999 OsKitaake01g255900 MYB21_ARATH Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=Length=22 FN3490-S Chr1 26232001 26297000 0 0 Deletion 64999 OsKitaake01g256000 SCGT_TOBAC Scopoletin glucosyltransferase OS=Nicotiana tabacum GN=TOGT1 PE=1 SV=Length=47 FN3490-S Chr1 26232001 26297000 0 0 Deletion 64999 OsKitaake01g256100 SCGT_TOBAC Scopoletin glucosyltransferase OS=Nicotiana tabacum GN=TOGT1 PE=1 SV=Length=47 FN3490-S Chr1 26232001 26297000 0 0 Deletion 64999 OsKitaake01g256200 Q5VNM4_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=P0004A09.19 PE=4 SV=Length=2 FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g057650 A0A0E0NAJ1_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=14 FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g057800 CCT1_ARATH Choline-phosphate cytidylyltransferase 1 OS=Arabidopsis thaliana GN=CCT1 PE=1 SV=Length=3 FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g057900 HDHD3_BOVIN Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Bos taurus GN=HDHD3 FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g058000 RLMI_TOLAT Ribosomal RNA large subunit methyltransferase I OS=Tolumonas auensis (strain DSM 9187 / T FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g058100 ALIS1_ARATH ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=Length=35 FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g058200 SSDH_ORYSJ Succinate-semialdehyde dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica GN=AL FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g058300 APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=1 SV=Length=35 FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g058400 SPL4_ORYSJ Squamosa promoter-binding-like protein 4 OS=Oryza sativa subsp. japonica GN=SPL4 PE=2 SV= FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g058500 HT1_ARATH Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=Length=39 FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g058600 ASR3_ARATH Trihelix transcription factor ASR3 OS=Arabidopsis thaliana GN=ASR3 PE=1 SV=Length=31 FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g058700 Y4312_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g31250 OS=Arabidopsis thal FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g058800 Hypothetical protein FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g058900 MARD1_ARATH Protein MARD1 OS=Arabidopsis thaliana GN=MARD1 PE=2 SV=Length=26 FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g059000 HKT6_ORYSJ Probable cation transporter HKT6 OS=Oryza sativa subsp. japonica GN=HKT6 PE=2 SV=Length=5 FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g059100 BZIP9_ARATH Basic leucine zipper 9 OS=Arabidopsis thaliana GN=BZIP9 PE=1 SV=Length=27 FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g059200 Q6H4Z9_ORYSJ Leucine zipper protein-like OS=Oryza sativa subsp. japonica GN=OJ1077_E05.7 PE=4 SV=Len FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g059300 VATA_DAUCA V-type proton ATPase catalytic subunit A OS=Daucus carota PE=2 SV=Length=62 FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g059400 B8AIK7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_06058 PE=4 SV=Len FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g059500 R27A3_ARATH 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=Length=14 FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g059600 CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g059500 R27A3_ARATH 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=Length=14 FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g059600 CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV FN3490-S Chr2 4088001 4217000 0 0 Deletion 128999 OsKitaake02g059700 A2X1I4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_06064 PE=4 SV=Len FN3490-S Chr4 817001 918000 0 0 Deletion 100999 OsKitaake04g006200 LRL11_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 OS=Arabidops FN3490-S Chr4 817001 918000 0 0 Deletion 100999 OsKitaake04g006400 A0A0E0DA32_9ORYZ Uncharacterized protein OS=Oryza meridionalis PE=4 SV=Length=19 FN3490-S Chr4 817001 918000 0 0 Deletion 100999 OsKitaake04g006600 Q6YT99_ORYSJ Os04g0115200 protein OS=Oryza sativa subsp. japonica GN=Os07g0442800 PE=2 SV=Length=18 FN3490-S Chr4 817001 918000 0 0 Deletion 100999 OsKitaake04g006650 A0A0E0J9G9_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=14 FN3490-S Chr4 817001 918000 0 0 Deletion 100999 OsKitaake04g006700 GPTC8_HUMAN G patch domain-containing protein 8 OS=Homo sapiens GN=GPATCH8 PE=1 SV=Length=150 FN3490-S Chr4 817001 918000 0 0 Deletion 100999 OsKitaake04g006800 A0A0E0P4K3_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=48 FN3490-S Chr4 817001 918000 0 0 Deletion 100999 OsKitaake04g006900 A2ZU10_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_02092 PE=4 SV=Length=93 FN3490-S Chr4 32148001 32159000 0 0 Deletion 10999 OsKitaake04g255600 OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=Length=50 FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g008800 GSXL8_ARATH Flavin-containing monooxygenase FMO GS-OX-like 8 OS=Arabidopsis thaliana GN=At5g61290 PE FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g008850 Hypothetical protein FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g008900 GSXL8_ARATH Flavin-containing monooxygenase FMO GS-OX-like 8 OS=Arabidopsis thaliana GN=At5g61290 PE FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g009000 GSXL9_ARATH Flavin-containing monooxygenase FMO GS-OX-like 9 OS=Arabidopsis thaliana GN=At5g07800 PE FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g009100 A0A0P0X1U6_ORYSJ Os07g0112351 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os07g0112351 PE= FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g009200 WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=Length=28 FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g009300 WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=Length=28 FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g009400 WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=Length=28 FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g009500 A2XS32_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_15428 PE=4 SV=Len FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g009600 LAML_ARATH Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=Length=17 FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g009700 IF5A4_SOLLC Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=Length=16 FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g009900 A0A0E0ITR0_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=11 FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g010000 A0A0E0AF58_9ORYZ Uncharacterized protein OS=Oryza glumipatula PE=4 SV=Length=12 FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g009900 A0A0E0ITR0_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=11 FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g010000 A0A0E0AF58_9ORYZ Uncharacterized protein OS=Oryza glumipatula PE=4 SV=Length=12 FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g010100 A2YHI5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_24657 PE=4 SV=Len FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g010200 PP354_ARATH Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g010250 A0A0E0ITQ6_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=60 FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g010300 FDL25_ARATH Putative F-box/FBD/LRR-repeat protein At4g03220 OS=Arabidopsis thaliana GN=At4g03220 PE= FN3490-S Chr7 738001 848000 0 0 Deletion 109999 OsKitaake07g010400 SRFR1_ARATH Suppressor of RPS4-RLD 1 OS=Arabidopsis thaliana GN=SRFR1 PE=1 SV=Length=105 FN3490-S Chr1 5466614 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3490-S Chr1 14755523 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr2 6334796 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr2 6334797 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr2 17956948 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3490-S Chr2 17956949 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3490-S Chr2 17956950 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3490-S Chr3 497376 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3490-S Chr3 19094088 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Homo FN3490-S Chr3 35204378 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr4 11578215 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3490-S Chr4 20753426 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3490-S Chr4 36547711 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr6 11589025 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr6 12087982 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr6 15915538 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr6 19091914 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr6 24690083 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3490-S Chr7 2732765 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr7 15496885 T-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3490-S Chr8 10252138 C-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3490-S Chr9 8849806 T-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr9 8857752 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr9 8857754 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr9 10420303 C-T 0 0 Single Base Substitution 0 INTRON Hetero FN3490-S Chr10 639693 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr10 11326114 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr10 16510303 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Homo FN3490-S Chr10 16510312 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo OsKitaake10g112200 C71Z6_ORYSJ Ent-isokaurene C2-hydroxylase OS=Oryza sativa subsp. japonica GN=CYP71Z6 PE=1 SV=Length= FN3490-S Chr11 80601 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr11 13639000 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3490-S Chr11 17596255 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr12 5103499 C-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3490-S Chr12 15963447 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero