FN3492-S Chr1 38216458 38216463 0 0 Deletion 5 INTERGENIC Hetero FN3492-S Chr2 5571131 5571143 0 0 Deletion 12 SPLICE_SITE_DONOR Homo OsKitaake02g076800 A0A0E0NB81_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=14 FN3492-S Chr2 35275442 35275444 0 0 Deletion 2 INTRON Hetero FN3492-S Chr3 5693641 5693653 0 0 Deletion 12 INTRON Hetero FN3492-S Chr4 9307333 9307346 0 0 Deletion 13 INTERGENIC Hetero FN3492-S Chr4 9364030 9364037 0 0 Deletion 7 FRAME_SHIFT Homo OsKitaake04g049100 B8AP87_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14479 PE=4 SV=Len FN3492-S Chr4 24505293 24505298 0 0 Deletion 5 UTR_3_PRIME Homo FN3492-S Chr5 8318904 8318914 0 0 Deletion 10 INTERGENIC Homo FN3492-S Chr5 13194649 13194665 0 0 Deletion 16 INTERGENIC Homo FN3492-S Chr6 20374297 20374298 0 0 Deletion 1 INTERGENIC Hetero FN3492-S Chr7 3234469 3234472 0 0 Deletion 3 CODON_DELETION Hetero OsKitaake07g040501 MA653_ARATH 65-kDa microtubule-associated protein 3 OS=Arabidopsis thaliana GN=MAP65-3 PE=1 SV=Lengt FN3492-S Chr12 383918 383925 0 0 Deletion 7 FRAME_SHIFT Hetero OsKitaake12g004500 FRI1_MAIZE Ferritin-1, chloroplastic OS=Zea mays GN=FER1 PE=1 SV=Length=25 FN3492-S Chr12 1516255 1516259 0 0 Deletion 4 FRAME_SHIFT Hetero OsKitaake12g022800 RPD1_ARATH Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=Length=40 FN3492-S Chr12 5372680 5372685 0 0 Deletion 5 INTERGENIC Hetero FN3492-S Chr12 19176488 19176494 0 0 Deletion 6 START_LOST+CODON_DELETION Hetero OsKitaake12g142601 B9GDD2_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_36247 PE=4 SV=Length=29 FN3492-S Chr12 25819936 25819940 0 0 Deletion 4 INTERGENIC Homo FN3492-S Chr2 21226792 21226792 0 0 Insertion 2 INTERGENIC Hetero FN3492-S Chr8 17352396 17352396 0 0 Insertion 2 INTERGENIC Hetero FN3492-S Chr3 26768562 Chr1 23544392 0 Translocation 0 Hetero FN3492-S Chr3 26768648 Chr1 23539904 0 Translocation 0 Hetero FN3492-S Chr6 27923001 27935000 0 0 Deletion 11999 OsKitaake06g253400 BCHB_ARATH BEACH domain-containing protein B OS=Arabidopsis thaliana GN=BCHB PE=4 SV=Length=260 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g149300 A0A0P0XPC2_ORYSJ Os09g0492800 protein OS=Oryza sativa subsp. japonica GN=Os09g0492800 PE=4 SV=Length FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g149400 I1R8B2_ORYGL Uncharacterized protein OS=Oryza glaberrima PE=4 SV=Length=14 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g149500 A0A0E0QT60_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=20 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g149600 B9G4C3_ORYSJ Os09g0493400 protein OS=Oryza sativa subsp. japonica GN=Os09g0493400 PE=4 SV=Length=52 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g149700 TKPR1_ARATH Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=Length=32 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g149800 UFD1_RAT Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Rattus norvegicus GN FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g149900 A0A0E0B4S0_9ORYZ Uncharacterized protein OS=Oryza glumipatula PE=4 SV=Length=49 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g150000 IOJAP_MAIZE Protein Iojap, chloroplastic OS=Zea mays GN=Ij PE=1 SV=Length=22 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g150100 NAC17_ARATH NAC domain-containing protein 17 OS=Arabidopsis thaliana GN=NAC017 PE=2 SV=Length=55 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g150200 DNJ10_ARATH Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=Length=39 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g150300 CTL1_ARATH Chitinase-like protein 1 OS=Arabidopsis thaliana GN=CTL1 PE=1 SV=Length=32 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g150400 MBD2_ARATH Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 PE=1 SV=Le FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g150500 A0A0E0QT75_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=32 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g150600 A0A0D3H8G1_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=26 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g150650 Hypothetical protein FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g150700 A0A0D3H8G2_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=21 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g150750 A0A0E0QT78_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=23 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g150800 Q0J0K6_ORYSJ Os09g0495200 protein OS=Oryza sativa subsp. japonica GN=Os09g0495200 PE=2 SV=Length=32 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g150900 A0A0N7KR18_ORYSJ Os09g0495300 protein OS=Oryza sativa subsp. japonica GN=Os09g0495300 PE=4 SV=Length FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g151000 A0A0E0QT85_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=17 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g151050 C7J750_ORYSJ Os09g0496100 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os09g0496100 PE=4 SV FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g151100 A0A0D3H8G9_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=8 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g151200 SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN1 PE=1 SV=Le FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g151100 A0A0D3H8G9_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=8 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g151200 SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN1 PE=1 SV=Le FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g151300 BRTL1_ARATH Probable mitochondrial adenine nucleotide transporter BTL1 OS=Arabidopsis thaliana GN=At FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g151400 PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=Length=96 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g151600 EMC3_DANRE ER membrane protein complex subunit 3 OS=Danio rerio GN=emc3 PE=2 SV=Length=26 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g151700 SAG12_ARATH Senescence-specific cysteine protease SAG12 OS=Arabidopsis thaliana GN=SAG12 PE=1 SV=Len FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g151800 B9G4D4_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_29884 PE=4 SV=Length=30 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g151900 Q0J0J2_ORYSJ Os09g0497700 protein OS=Oryza sativa subsp. japonica GN=Os09g0497700 PE=4 SV=Length=44 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g152000 NAC79_ARATH NAC domain-containing protein 79 OS=Arabidopsis thaliana GN=NAC079 PE=2 SV=Length=32 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g152100 B7F666_ORYSJ Os09g0498000 protein OS=Oryza sativa subsp. japonica GN=Os09g0498000 PE=2 SV=Length=7 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g152200 RS16B_ARATH 30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RPS1 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g152300 TP1A_MALDO Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=Length=24 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g152400 SOX_ARATH Probable sarcosine oxidase OS=Arabidopsis thaliana GN=At2g24580 PE=2 SV=Length=41 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g152500 HEN4_ARATH KH domain-containing protein HEN4 OS=Arabidopsis thaliana GN=HEN4 PE=1 SV=Length=85 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g152600 Q0J0R4_ORYSJ Os09g0498700 protein OS=Oryza sativa subsp. japonica GN=Os09g0498700 PE=2 SV=Length=37 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g152700 Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=Length=51 FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g152800 B8BD40_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_31908 PE=4 SV=Len FN3492-S Chr9 18815001 19067000 0 0 Deletion 251999 OsKitaake09g152900 A0A0E0QTA8_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=12 FN3492-S Chr1 14437416 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3492-S Chr1 43614334 A-T 0 0 Single Base Substitution 0 INTRON Hetero FN3492-S Chr2 4905428 T-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3492-S Chr2 8785966 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr2 10855856 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake02g127100 CLH2_ARATH Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=Length=31 FN3492-S Chr2 13400000 C-T 0 0 Single Base Substitution 0 INTRON Hetero FN3492-S Chr2 27043038 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Hetero FN3492-S Chr2 32973809 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr2 32973811 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr3 6796256 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr3 10055215 C-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr3 17869674 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo OsKitaake03g218900 A0A0E0NWL9_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=31 FN3492-S Chr4 2906750 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3492-S Chr4 3851224 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3492-S Chr4 18221655 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3492-S Chr5 11527048 C-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr5 27085904 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN3492-S Chr5 29364763 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr6 2669063 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr7 1636978 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr7 12314062 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr7 28689828 T-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3492-S Chr8 10497733 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3492-S Chr8 15776513 A-G 0 0 Single Base Substitution 0 INTRON Homo FN3492-S Chr8 22700493 C-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3492-S Chr8 24612542 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr8 25358528 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Hetero FN3492-S Chr8 28409385 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr9 1639387 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr9 8279362 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3492-S Chr9 12918855 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3492-S Chr10 10219066 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr10 15989889 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3492-S Chr11 130383 C-T 0 0 Single Base Substitution 0 STOP_GAINED Homo OsKitaake11g000240 CLH1_ORYSJ Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica GN=Os11g0104900 PE=3 SV=Length=170 FN3492-S Chr11 25243381 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3492-S Chr12 16434968 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero