FN3541-S Chr1 3371365 3371367 0 0 Deletion 2 INTERGENIC Hetero FN3541-S Chr8 9334088 9334090 0 0 Deletion 2 INTERGENIC Hetero FN3541-S Chr9 12687280 12687281 0 0 Deletion 1 INTERGENIC Homo FN3541-S Chr10 4438070 4438072 0 0 Deletion 2 INTERGENIC Homo FN3541-S Chr11 14942495 14942496 0 0 Deletion 1 INTERGENIC Homo FN3541-S Chr6 26788835 Chr4 34401563 0 Translocation 0 Hetero OsKitaake06g239800 VLN3_ORYSJ Villin-3 OS=Oryza sativa subsp. japonica GN=VLN3 PE=2 SV=Length=97 FN3541-S Chr6 26794114 Chr4 34400391 0 Translocation 0 Hetero OsKitaake06g239800 VLN3_ORYSJ Villin-3 OS=Oryza sativa subsp. japonica GN=VLN3 PE=2 SV=Length=97 FN3541-S Chr4 17994143 Chr1 14777398 0 Translocation 0 Hetero OsKitaake01g167200 RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=Length=26 FN3541-S Chr4 17994151 Chr1 14777254 0 Translocation 0 Hetero OsKitaake01g167200 RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=Length=26 FN3541-S Chr1 14469976 14851628 0 0 Inversion 0 Hetero OsKitaake01g141400 RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=Length= FN3541-S Chr1 14469989 14851637 0 0 Inversion 0 Hetero OsKitaake01g141400 RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=Length= FN3541-S Chr10 10109737 10215740 0 0 Inversion 0 Hetero FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g165900 AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=Length=151 FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g166000 TPK2_ORYSJ Thiamine pyrophosphokinase 2 OS=Oryza sativa subsp. japonica GN=TPK2 PE=2 SV=Length=26 FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g166200 TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV= FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g166300 PLRX1_ARATH Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=P FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g166400 Q5ZBK5_ORYSJ Os01g0356951 protein OS=Oryza sativa subsp. japonica GN=Os01g0356951 PE=4 SV=Length=9 FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g166500 NIR_ORYSJ Ferredoxin--nitrite reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g03571 FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g166600 Q5ZBK3_ORYSJ Os01g0357200 protein OS=Oryza sativa subsp. japonica GN=Os01g0357200 PE=2 SV=Length=8 FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g166650 Hypothetical protein FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g166700 AMYC1_ORYSJ Alpha-amylase isozyme C OS=Oryza sativa subsp. japonica GN=AMY1B PE=2 SV=Length=34 FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g166750 A0A0D3ENN7_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=12 FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g166800 PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E3 FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g166900 RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=Length=11 FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g166950 Hypothetical protein FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g167000 RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=Length=11 FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g167100 LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 PE=1 SV=Le FN3541-S Chr1 14607001 14779000 0 0 Deletion 171999 OsKitaake01g167200 RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=Length=26 FN3541-S Chr1 5122366 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Homo FN3541-S Chr1 12336810 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr1 14269702 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr1 18444849 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr1 42349842 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME Hetero FN3541-S Chr2 14689017 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3541-S Chr2 24881801 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3541-S Chr3 27198024 G-A 0 0 Single Base Substitution 0 INTRON Hetero FN3541-S Chr3 31409806 C-A 0 0 Single Base Substitution 0 INTRON Hetero FN3541-S Chr4 2545626 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr4 5072594 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3541-S Chr4 7772898 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr5 16043917 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr5 17397814 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr6 4125753 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr6 14108666 T-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN3541-S Chr7 2309962 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr7 23858502 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr9 19690115 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr10 1720064 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr10 3061755 T-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3541-S Chr10 9800163 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr10 10928869 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr10 12798461 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr10 14245570 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr10 20814848 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN3541-S Chr11 9598049 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr11 12327350 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3541-S Chr11 17681566 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3541-S Chr11 21011924 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr11 27515426 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake11g224100 Q2QZZ6_ORYSJ Os11g0664400 protein OS=Oryza sativa subsp. japonica GN=Os11g0664400 PE=4 SV=Length=24 FN3541-S Chr12 9918558 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3541-S Chr12 11880054 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero