FN3709-S Chr1 20979837 20979840 0 0 Deletion 3 INTRON Hetero FN3709-S Chr2 4001112 4001118 0 0 Deletion 6 INTERGENIC Hetero FN3709-S Chr3 23465398 23465399 0 0 Deletion 1 INTERGENIC Hetero FN3709-S Chr3 28339160 28339197 0 0 Deletion 37 INTRON Homo FN3709-S Chr3 35295474 35295483 0 0 Deletion 9 INTERGENIC Hetero FN3709-S Chr4 7387268 7387274 0 0 Deletion 6 INTERGENIC Homo FN3709-S Chr4 8825478 8825501 0 0 Deletion 23 INTERGENIC Homo FN3709-S Chr4 16113649 16113653 0 0 Deletion 4 INTERGENIC Homo FN3709-S Chr4 16964218 16964223 0 0 Deletion 5 INTERGENIC Homo FN3709-S Chr6 6517168 6517170 0 0 Deletion 2 INTERGENIC Hetero FN3709-S Chr7 23857805 23857814 0 0 Deletion 9 INTERGENIC Homo FN3709-S Chr8 7865628 7865632 0 0 Deletion 4 INTERGENIC Hetero FN3709-S Chr1 32477520 32477520 0 0 Insertion 2 INTERGENIC Hetero FN3709-S Chr3 36859442 36859442 0 0 Insertion 3 CODON_CHANGE_PLUS_CODON_INSERTION Hetero OsKitaake03g411800 Q75LC2_ORYSJ Os03g0844850 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0032G11.20 PE=4 SV=Length FN3709-S Chr8 3245576 3245576 0 0 Insertion 2 INTERGENIC Hetero FN3709-S Chr11 7413998 7413998 0 0 Insertion 2 INTERGENIC Hetero FN3709-S Chr12 21003347 21003347 0 0 Insertion 2 UTR_5_PRIME Hetero FN3709-S Chr12 26729664 26729664 0 0 Insertion 6 INTRON Hetero FN3709-S Chr1 17199878 17200043 0 0 Deletion 165 Hetero 0 FN3709-S Chr6 21326890 Chr3 1397254 0 Translocation 0 Hetero OsKitaake06g189100 PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana G FN3709-S Chr12 26008715 Chr3 1397481 0 Translocation 0 Hetero OsKitaake12g215300 MBD10_ARATH Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana GN=MBD10 PE=1 SV FN3709-S Chr5 28857431 Chr3 1397483 0 Translocation 0 Hetero OsKitaake03g020300 A0A0D3FD69_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=27 FN3709-S Chr6 21326890 Chr3 1397254 0 Translocation 0 Hetero OsKitaake03g020300 A0A0D3FD69_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=27 FN3709-S Chr12 26008715 Chr3 1397481 0 Translocation 0 Hetero OsKitaake03g020300 A0A0D3FD69_9ORYZ Uncharacterized protein OS=Oryza barthii PE=4 SV=Length=27 FN3709-S Chr5 28858026 Chr3 1388455 0 Translocation 0 Hetero FN3709-S Chr4 5120746 5736532 0 0 Inversion 0 Homo OsKitaake04g024400 ATI1_ARATH ATG8-interacting protein 1 OS=Arabidopsis thaliana GN=ATI1 PE=1 SV=Length=25 FN3709-S Chr6 21326887 22324525 0 0 Inversion 0 Homo OsKitaake06g189100 PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana G FN3709-S Chr12 9385901 9711155 0 0 Inversion 0 Homo OsKitaake12g091500 RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=Length=92 FN3709-S Chr12 9105020 9385880 0 0 Inversion 0 Homo OsKitaake12g091500 RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=Length=92 FN3709-S Chr12 9385901 9711155 0 0 Inversion 0 Homo OsKitaake12g093400 Q2QU28_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=LOC_Os12g17690 PE=4 SV=Lengt FN3709-S Chr12 9142735 9158199 0 0 Inversion 0 Homo FN3709-S Chr5 8908001 8960000 0 0 Deletion 51999 OsKitaake05g084100 A2Y283_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19114 PE=4 SV=Len FN3709-S Chr5 8908001 8960000 0 0 Deletion 51999 OsKitaake05g084200 Hypothetical protein FN3709-S Chr5 8908001 8960000 0 0 Deletion 51999 OsKitaake05g084300 WIT1_ARATH WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=Le FN3709-S Chr5 8908001 8960000 0 0 Deletion 51999 OsKitaake05g084400 SYLC_ARATH Leucine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At1g09620 PE=1 SV=Length=109 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g084500 TPT_ORYSJ Triose phosphate/phosphate translocator TPT, chloroplastic OS=Oryza sativa subsp. japonica FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g084600 ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=Length=32 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g084700 Q60E22_ORYSJ Os05g0241400 protein OS=Oryza sativa subsp. japonica GN=Os05g0241400 PE=2 SV=Length=15 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g084800 B9FNF8_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_17761 PE=4 SV=Length=51 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g084801 Hypothetical protein FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g084900 Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=Length=47 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g085000 Q60E15_ORYSJ Os05g0242600 protein OS=Oryza sativa subsp. japonica GN=Os05g0242600 PE=2 SV=Length=22 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g085100 B9FNG2_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_17771 PE=4 SV=Length=19 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g085200 RL13_AQUAE 50S ribosomal protein L13 OS=Aquifex aeolicus (strain VF5) GN=rplM PE=3 SV=Length=14 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g085300 A2ZUQ9_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_02353 PE=4 SV=Length=73 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g085200 RL13_AQUAE 50S ribosomal protein L13 OS=Aquifex aeolicus (strain VF5) GN=rplM PE=3 SV=Length=14 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g085300 A2ZUQ9_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_02353 PE=4 SV=Length=73 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g085500 EXG_BLUGR Glucan 1,3-beta-glucosidase OS=Blumeria graminis PE=3 SV=Length=42 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g085600 Hypothetical protein FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g085700 Y4844_ARATH Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=Length=15 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g085800 DAAA_ARATH D-amino-acid transaminase, chloroplastic OS=Arabidopsis thaliana GN=DAAT PE=1 SV=Length=3 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g086000 A0A0N7KKE5_ORYSJ Os05g0244900 protein OS=Oryza sativa subsp. japonica GN=Os05g0244900 PE=4 SV=Length FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g086100 B8AZW8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19145 PE=4 SV=Len FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g086200 BLE3_ORYSJ CASP-like protein BLE3 OS=Oryza sativa subsp. japonica GN=BLE3 PE=2 SV=Length=16 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g086300 Q5W700_ORYSJ Os05g0245700 protein OS=Oryza sativa subsp. japonica GN=Os05g0245700 PE=4 SV=Length=7 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g086400 EXB18_ORYSJ Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=Length=26 FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g086500 Y1570_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thal FN3709-S Chr5 8973001 9316000 0 0 Deletion 342999 OsKitaake05g086600 XIP2_ORYSJ Xylanase inhibitor protein 2 OS=Oryza sativa subsp. japonica GN=Chib3H-h PE=1 SV=Length=2 FN3709-S Chr12 9104001 9142000 0 0 Deletion 37999 OsKitaake12g090500 RN168_DANRE E3 ubiquitin-protein ligase rnf168 OS=Danio rerio GN=rnf168 PE=2 SV=Length=47 FN3709-S Chr12 9104001 9142000 0 0 Deletion 37999 OsKitaake12g090600 C71A9_SOYBN Cytochrome P450 71A9 OS=Glycine max GN=CYP71A9 PE=2 SV=Length=49 FN3709-S Chr1 1580062 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr1 1580063 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr1 10251266 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr1 10251267 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr1 13404482 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr1 21355866 T-C 0 0 Single Base Substitution 0 INTRON Homo FN3709-S Chr2 10682589 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr2 34258009 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3709-S Chr3 19160049 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr3 27089042 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr3 31950867 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3709-S Chr4 5903906 G-A 0 0 Single Base Substitution 0 INTRON Homo FN3709-S Chr4 7457636 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3709-S Chr4 9973270 T-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr4 20353240 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr4 31238069 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr4 31751549 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr4 33700451 G-A 0 0 Single Base Substitution 0 INTRON Hetero FN3709-S Chr4 33700452 G-A 0 0 Single Base Substitution 0 INTRON Hetero FN3709-S Chr5 6299728 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr5 14325118 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr5 15805970 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr6 20908273 C-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN3709-S Chr7 637053 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr8 9396418 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr8 18148334 T-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr8 18657402 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr9 2871767 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr9 4824377 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr9 8565424 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr9 13653401 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr10 3384194 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3709-S Chr10 18184944 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo OsKitaake10g128500 Q7XDI4_ORYSJ Expressed protein OS=Oryza sativa subsp. japonica GN=LOC_Os10g33240 PE=4 SV=Length=98 FN3709-S Chr11 1269901 G-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3709-S Chr11 16828189 C-G 0 0 Single Base Substitution 0 UTR_5_PRIME Hetero FN3709-S Chr11 22987907 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr11 22987914 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3709-S Chr12 10279682 A-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3709-S Chr12 10279683 T-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3709-S Chr12 13303223 G-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3709-S Chr12 13884889 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero