FN3740-S Chr1 22260594 22260609 0 0 Deletion 15 INTERGENIC Homo FN3740-S Chr1 28691879 28691897 0 0 Deletion 18 INTERGENIC Hetero FN3740-S Chr2 9956682 9956685 0 0 Deletion 3 INTERGENIC Hetero FN3740-S Chr2 22458802 22458804 0 0 Deletion 2 INTERGENIC Hetero FN3740-S Chr3 7342225 7342231 0 0 Deletion 6 INTRON Homo FN3740-S Chr3 37731440 37731442 0 0 Deletion 2 UTR_5_PRIME Hetero FN3740-S Chr4 12855161 12855163 0 0 Deletion 2 INTRON Hetero FN3740-S Chr6 6262179 6262186 0 0 Deletion 7 UTR_3_PRIME Homo FN3740-S Chr6 29237008 29237013 0 0 Deletion 5 INTERGENIC Hetero FN3740-S Chr7 18303562 18303566 0 0 Deletion 4 INTERGENIC Homo FN3740-S Chr8 9521873 9521878 0 0 Deletion 5 INTERGENIC Hetero FN3740-S Chr10 3432214 3432215 0 0 Deletion 1 INTERGENIC Hetero FN3740-S Chr11 8648246 8648248 0 0 Deletion 2 INTERGENIC Hetero FN3740-S Chr11 18197982 18197983 0 0 Deletion 1 INTERGENIC Hetero FN3740-S Chr12 1814071 1814075 0 0 Deletion 4 INTERGENIC Homo FN3740-S Chr9 2889127 2889128 0 0 Deletion 1 Hetero 0 FN3740-S Chr8 24204719 24275754 0 0 Inversion 0 Hetero OsKitaake08g187700 CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=Length=38 FN3740-S Chr1 16090905 16281157 0 0 Inversion 0 Homo FN3740-S Chr1 16090916 16281157 0 0 Inversion 0 Homo FN3740-S Chr8 24204740 24275896 0 0 Inversion 0 Hetero FN3740-S Chr1 18699383 T-C 0 0 Single Base Substitution 0 INTRON Homo FN3740-S Chr1 26852743 C-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN3740-S Chr1 38404582 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr2 2802167 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN3740-S Chr2 4188441 T-C 0 0 Single Base Substitution 0 INTRON Hetero FN3740-S Chr2 22021996 A-G 0 0 Single Base Substitution 0 INTRON Hetero FN3740-S Chr2 25169502 C-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr2 29946999 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr3 27854142 A-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr3 29800083 C-A 0 0 Single Base Substitution 0 INTRON Hetero FN3740-S Chr3 29906777 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr3 30509402 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr3 33398611 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr4 8052088 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr4 11135228 C-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr4 34171725 G-C 0 0 Single Base Substitution 0 START_GAINED Homo FN3740-S Chr4 35117181 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr5 8245358 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr5 13005216 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr5 13936015 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr5 16777882 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr5 20349755 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr6 14124604 T-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN3740-S Chr7 11385619 T-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN3740-S Chr8 11322677 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr8 19483964 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr9 9835332 G-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3740-S Chr9 15240236 T-A 0 0 Single Base Substitution 0 STOP_GAINED Hetero OsKitaake09g106500 CSLC2_ORYSJ Probable xyloglucan glycosyltransferase 2 OS=Oryza sativa subsp. japonica GN=CSLC2 PE=2 FN3740-S Chr9 21091933 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr10 4634826 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3740-S Chr10 8887053 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr10 15345953 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3740-S Chr10 23456735 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Homo FN3740-S Chr11 21622265 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr11 23062471 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3740-S Chr11 25065715 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN3740-S Chr12 267986 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3740-S Chr12 16030184 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3740-S Chr12 20047889 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3740-S Chr12 25912627 C-G 0 0 Single Base Substitution 0 INTERGENIC Homo