FN3799-S Chr1 25693350 25693361 0 0 Deletion 11 INTRON Hetero FN3799-S Chr2 26902542 26902549 0 0 Deletion 7 INTERGENIC Homo FN3799-S Chr3 11380872 11380873 0 0 Deletion 1 INTRON Hetero FN3799-S Chr4 9777594 9777600 0 0 Deletion 6 INTERGENIC Homo FN3799-S Chr4 12420556 12420568 0 0 Deletion 12 INTERGENIC Homo FN3799-S Chr4 14795636 14795645 0 0 Deletion 9 INTERGENIC Hetero FN3799-S Chr6 1520423 1520424 0 0 Deletion 1 INTRON Homo FN3799-S Chr6 13907491 13907503 0 0 Deletion 12 INTERGENIC Homo FN3799-S Chr7 17524091 17524102 0 0 Deletion 11 INTERGENIC Homo FN3799-S Chr7 25406639 25406645 0 0 Deletion 6 INTERGENIC Hetero FN3799-S Chr11 5408225 5408226 0 0 Deletion 1 INTERGENIC Hetero FN3799-S Chr12 26910186 26910198 0 0 Deletion 12 CODON_DELETION Hetero OsKitaake12g225100 PPAF2_IPOBA Purple acid phosphatase 2 OS=Ipomoea batatas GN=PAP2 PE=1 SV=Length=46 FN3799-S Chr3 16374204 16374204 0 0 Insertion 3 INTERGENIC Hetero FN3799-S Chr3 35917621 35917621 0 0 Insertion 2 INTERGENIC Hetero FN3799-S Chr8 26914061 26914061 0 0 Insertion 3 INTERGENIC Hetero FN3799-S Chr9 20801238 20801238 0 0 Insertion 2 INTERGENIC Hetero FN3799-S Chr11 28172320 28172320 0 0 Insertion 2 INTERGENIC Hetero FN3799-S Chr12 3464414 3464414 0 0 Insertion 2 INTERGENIC Hetero FN3799-S Chr4 10396607 10396608 0 0 Deletion 1 Hetero OsKitaake04g055500 Y281_PECAS UPF0307 protein ECA0281 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) FN3799-S Chr3 20044043 20044043 0 0 Insertion 1 Hetero 0 FN3799-S Chr8 2514933 2514933 0 0 Insertion 1 Hetero 0 FN3799-S Chr8 2057418 Chr6 30680818 0 Translocation 0 Hetero OsKitaake08g024100 A0A0E0CPG4_9ORYZ Uncharacterized protein OS=Oryza meridionalis PE=4 SV=Length=15 FN3799-S Chr8 2057420 Chr6 30680328 0 Translocation 0 Hetero OsKitaake08g024100 A0A0E0CPG4_9ORYZ Uncharacterized protein OS=Oryza meridionalis PE=4 SV=Length=15 FN3799-S Chr8 2057418 Chr6 30680818 0 Translocation 0 Hetero OsKitaake06g289600 CHI3_ORYSJ Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=Length=32 FN3799-S Chr8 2057420 Chr6 30680328 0 Translocation 0 Hetero OsKitaake06g289600 CHI3_ORYSJ Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=Length=32 FN3799-S Chr9 6970207 Chr1 6990310 0 Translocation 0 Hetero FN3799-S Chr10 8627703 Chr5 15033389 0 Translocation 0 Hetero FN3799-S Chr1 36805142 36912688 0 0 Inversion 0 Hetero OsKitaake01g391400 SAC3A_ARATH SAC3 family protein A OS=Arabidopsis thaliana GN=SAC3A PE=1 SV=Length=100 FN3799-S Chr1 13979864 14777277 0 0 Inversion 0 Hetero OsKitaake01g167200 RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=Length=26 FN3799-S Chr1 13979876 14777286 0 0 Inversion 0 Hetero OsKitaake01g167200 RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=Length=26 FN3799-S Chr1 36662705 36912688 0 0 Inversion 0 Hetero OsKitaake01g393100 C7IWY2_ORYSJ Os01g0838350 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os01g0838350 PE=4 SV FN3799-S Chr1 36805142 36912688 0 0 Inversion 0 Hetero OsKitaake01g393100 C7IWY2_ORYSJ Os01g0838350 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os01g0838350 PE=4 SV FN3799-S Chr10 12628579 12675366 0 0 Inversion 0 Homo FN3799-S Chr10 12628587 12675368 0 0 Inversion 0 Homo FN3799-S Chr1 6988001 7009000 0 0 Deletion 20999 OsKitaake01g087900 BAC2_ARATH Mitochondrial arginine transporter BAC2 OS=Arabidopsis thaliana GN=BAC2 PE=1 SV=Length=29 FN3799-S Chr1 6988001 7009000 0 0 Deletion 20999 OsKitaake01g087908 Hypothetical protein FN3799-S Chr9 14630001 14740000 0 0 Deletion 109999 OsKitaake09g099850 Hypothetical protein FN3799-S Chr9 14630001 14740000 0 0 Deletion 109999 OsKitaake09g099900 CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=Le FN3799-S Chr9 14630001 14740000 0 0 Deletion 109999 OsKitaake09g100000 Hypothetical protein FN3799-S Chr9 14630001 14740000 0 0 Deletion 109999 OsKitaake09g099900 CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=Le FN3799-S Chr9 14630001 14740000 0 0 Deletion 109999 OsKitaake09g100100 PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=Length=62 FN3799-S Chr9 14630001 14740000 0 0 Deletion 109999 OsKitaake09g100200 Hypothetical protein FN3799-S Chr9 14630001 14740000 0 0 Deletion 109999 OsKitaake09g100300 BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=Length=35 FN3799-S Chr9 14630001 14740000 0 0 Deletion 109999 OsKitaake09g100400 PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana GN=At5g614 FN3799-S Chr9 14630001 14740000 0 0 Deletion 109999 OsKitaake09g100500 WRK76_ORYSI WRKY transcription factor WRKY76 OS=Oryza sativa subsp. indica GN=WRKY76 PE=2 SV=Length= FN3799-S Chr9 14630001 14740000 0 0 Deletion 109999 OsKitaake09g100600 WRK62_ORYSJ WRKY transcription factor WRKY62 OS=Oryza sativa subsp. japonica GN=WRKY62 PE=1 SV=Lengt FN3799-S Chr9 14630001 14740000 0 0 Deletion 109999 OsKitaake09g100700 CIPKG_ORYSJ CBL-interacting protein kinase 16 OS=Oryza sativa subsp. japonica GN=CIPK16 PE=2 SV=Leng FN3799-S Chr9 14630001 14740000 0 0 Deletion 109999 OsKitaake09g100800 CIPKR_ORYSJ Putative CBL-interacting protein kinase 27 OS=Oryza sativa subsp. japonica GN=CIPK27 PE= FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g100900 A0A0E0IJM0_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=9 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g101000 A0A0E0ES95_9ORYZ Uncharacterized protein OS=Oryza meridionalis PE=4 SV=Length=10 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g101100 CCR1_ARATH Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=Length=34 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g101200 A0A0E0QRH1_ORYRU Uncharacterized protein OS=Oryza rufipogon PE=4 SV=Length=30 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g101300 R1442_DANRE Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio GN=rnf144ab PE=2 SV=Length FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g101400 RN217_XENLA Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis GN=rnf217 PE=2 SV=Length=2 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g101500 R1441_DANRE Probable E3 ubiquitin-protein ligase RNF144A-A OS=Danio rerio GN=rnf144aa PE=3 SV=Length FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g101600 R1442_DANRE Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio GN=rnf144ab PE=2 SV=Length FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g101800 GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 5144 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g101901 A0A0E0IJM9_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=12 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g102000 PSMD9_MOUSE 26S proteasome non-ATPase regulatory subunit 9 OS=Mus musculus GN=Psmd9 PE=1 SV=Length=2 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g102100 CX171_ARATH Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana GN=COX17-1 PE=2 SV=Lengt FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g102200 RUB1_ORYSJ Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=2 SV=Length= FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g102300 NPY1_ARATH BTB/POZ domain-containing protein NPY1 OS=Arabidopsis thaliana GN=NPY1 PE=2 SV=Length=57 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g102400 DHYS_MUSAC Deoxyhypusine synthase OS=Musa acuminata GN=DHS PE=2 SV=Length=37 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g102500 KN7I_ORYSJ Kinesin-like protein KIN-7I OS=Oryza sativa subsp. japonica GN=KIN7I PE=2 SV=Length=121 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g102600 PLDA1_ARATH Phospholipase D alpha 1 OS=Arabidopsis thaliana GN=PLDALPHA1 PE=1 SV=Length=81 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g102701 A0A0N7KQT7_ORYSJ Os09g0421400 protein OS=Oryza sativa subsp. japonica GN=Os09g0421400 PE=4 SV=Length FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g102800 Q69P61_ORYSJ Os09g0421500 protein OS=Oryza sativa subsp. japonica GN=OJ1740_D06.19-1 PE=2 SV=Length= FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g102900 UBA1C_ARATH UBP1-associated proteins 1C OS=Arabidopsis thaliana GN=UBA1C PE=3 SV=Length=61 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g103000 ZN346_XENLA Zinc finger protein 346 OS=Xenopus laevis GN=znf346 PE=1 SV=Length=52 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g103100 Z385D_RAT Zinc finger protein 385D OS=Rattus norvegicus GN=Znf385d PE=2 SV=Length=39 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g103300 PHT1_ORYSJ Putrescine hydroxycinnamoyltransferase 1 OS=Oryza sativa subsp. japonica GN=PHT1 PE=2 SV= FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g103500 CESA9_ORYSJ Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica G FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g103600 AUG8_ARATH AUGMIN subunit 8 OS=Arabidopsis thaliana GN=AUG8 PE=1 SV=Length=64 FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g103700 Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS= FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g103800 PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thal FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g103900 FBT6_ARATH Probable folate-biopterin transporter 6 OS=Arabidopsis thaliana GN=At5g10820 PE=2 SV=Leng FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g104000 ASPA_ARATH Aspartyl protease family protein At5g10770 OS=Arabidopsis thaliana GN=At5g10770 PE=2 SV=L FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g104100 MGDG1_ORYSJ Probable monogalactosyldiacylglycerol synthase 1, chloroplastic OS=Oryza sativa subsp. j FN3799-S Chr9 14746001 15053000 0 0 Deletion 306999 OsKitaake09g104200 SPA_SOLLC Protein SPA, chloroplastic OS=Solanum lycopersicum GN=SPA PE=2 SV=Length=15 FN3799-S Chr1 11781704 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr1 13130461 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr1 14425914 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr1 23518882 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3799-S Chr1 32117323 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake01g323600 DRP5A_ARATH Dynamin-related protein 5A OS=Arabidopsis thaliana GN=DRP5A PE=2 SV=Length=81 FN3799-S Chr1 36148596 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr1 36148773 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr2 29137106 A-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3799-S Chr3 908010 G-C 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN3799-S Chr3 1855948 C-G 0 0 Single Base Substitution 0 UTR_5_PRIME Hetero FN3799-S Chr3 19755630 T-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr3 26573003 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr3 32616361 A-G 0 0 Single Base Substitution 0 INTRON Hetero FN3799-S Chr3 34904982 T-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3799-S Chr3 35644584 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Hetero OsKitaake03g391300 A0A0E0GVL2_ORYNI Uncharacterized protein OS=Oryza nivara PE=4 SV=Length=28 FN3799-S Chr4 17667782 C-T 0 0 Single Base Substitution 0 INTERGENIC Homo FN3799-S Chr4 28145486 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr4 34748867 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr4 34939242 T-C 0 0 Single Base Substitution 0 INTERGENIC Homo FN3799-S Chr5 895811 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr5 895812 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr5 1395073 A-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN3799-S Chr5 3537880 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr6 2380420 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr6 5739051 G-A 0 0 Single Base Substitution 0 INTERGENIC Homo FN3799-S Chr6 21543298 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr6 21835938 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr6 23625471 T-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING Hetero FN3799-S Chr6 30681111 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN3799-S Chr7 11301897 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr7 22288022 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr7 22406973 C-G 0 0 Single Base Substitution 0 INTERGENIC Homo FN3799-S Chr8 1330020 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr8 2057882 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr8 4353286 A-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr8 20644049 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME Hetero FN3799-S Chr8 28621364 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr9 6685489 C-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr10 14602746 A-G 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr11 16287065 G-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr11 21493639 G-T 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr12 8555315 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr12 10235484 C-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr12 13303749 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr12 13502263 T-C 0 0 Single Base Substitution 0 INTERGENIC Hetero FN3799-S Chr12 17590238 G-A 0 0 Single Base Substitution 0 INTERGENIC Hetero